Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446370

Identifier: 46446370

GI number: 46446370

Start: 901100

End: 903697

Strand: Reverse

Name: 46446370

Synonym: pc0736

Alternate gene names: NA

Gene position: 903697-901100 (Counterclockwise)

Preceding gene: 46446372

Following gene: 46446368

Centisome position: 37.43

GC content: 33.6

Gene sequence:

>2598_bases
GTGCATATTATTGAAAGCTATAATATAGGGCTTATGAATTCAGCCAAGGTGAGACAGGAAGCTACTCATTACTTGCGCAA
CCCTGAAAAATTGAAAGCAGAACGGCGCTTTCTTTTAACAATTGTCAGGCTTTCGAAAGATTGCATAAAAATAAAGGTCG
CGGCTGCAAATGCCTTGATGATTTTAAAAAAAACCAATTTTTCTTTTATCGGCTCTGATTTCAGAGGGATCCAAGCTCCC
GGTGTTAGGCTTGCCCGAACTCTTTTGGACAAGGTTAATTTCTCAGGGGCGAATCTAAAAGGGGCGAATTTTACCGACTG
CTCCTTGGAAGATACCATTCTCGATGACGCGCAACTTGAGGGTGTCCAATTTGGCAAGCTTCCTTATTTAAACCACCAAG
ACAATGTACTCGCTATGGCTTTATCTCCTAATGGCAAGCATTTAGCCTCCACTGGTGCAAAAAATCTCTATGTCTGGAAT
CTGGAAACATTTGAAGTTGAAAAACAACCATTAGAAACAGGAAGGGATTGGAAGACTTTTCTCCTATTCTTTCAAGATGG
TCAATTTCTTTTTAAAGCTTATAGCAAGATAGGAAACCGGACTCATAAACTAAAAGTTGAAATATGGAAAACTAATCCAC
TAGAAATGATTAATAGATTGATTTTTGACAATGTTAGCATTTTTTTGTTATTAGCTCTTACTCGAGATGGAACAAAGCTT
GTTAGTGTAGGCGTAAAAAATGAAATTTTATGCGATGCAGAAACAGAAATTTGCCTTTGGCAAGTAGACTTCAACGAACA
AAGCCTTCCTCAACTTACATTAGCTAAGAAAAAAATAATAACAGGCTTAGCAAAGAAGGCTAGCTATGCTCCCAAAATCT
CTGTTATTGCCCTATATTTTTTTGAAAGAAGTTGCGTTGAATTTTACTCTCTTCCTGACTTGGAAATTAAACAAGATTGG
AAGTTGCCACTGAAAATGAAAAAGAAATACAAAGTTAGCAATATGATATTTACTTCCCAAGAGAGCCAGCTTATTATAAG
TATCCTTACCGGAATTAGTGAAGTTTTTGGTGAAGTTAAAGATAAAGTATATATCTGGGATATAAAAAATAAGAAAAAAA
AGTTTTTATTTTTTGAAAAACGTCCTATAACTAACCTCCAATTTTTGCCAGATAGCCCATGGATGGCCTACTTTACAGGT
GATAAACACGATGAAGTCTTTTTTCGCACCCGTGACAAAGATTTTAAATTAAAGTTCAGCGAACAACTTTCTGCTAAAAT
CAATGATATATATCAATTATATCAACGAACCATCAGTAATAGTAGTAGTACTATAACTCAAAATTTTATTTCTAATGGTC
AATTTGTCTTTCGGTCTAAAACTAACCAAATTTTTATTGCTCCCTTAAAAAATTTTGTAGGTAAAAAAGAATTTACTCTA
TCTATTAGTGCTCTCCATTTTTCTTCAGATGAGCAAACAATTTATCTTTGGATGGTTGAAAATAAGTCATATTATTCTCC
AGATGGACAAACAAAATGTCTTTGGAATGCTGAAAATAAACTCTATATTTATCAGACTTCTAATGGGAAAAATCTTGGGC
ATAAAAACTTACAGAAACCTTCTTTTGAACCGATGTGGATGTGGGGTTGCCGCCTCTCTTCCAATGCTCAATACTGCATT
AAAACATATTATCATACAAGCCCTGGCAAAAATAAAATTATTATTTCTCAAGTTGAAAATAAAGATGTGCAAAGTTCATA
TATAGGAACTTTTTTCGCTTGTACTTTATCAAAAGATAATCGTTATCTCCTCTTTATTTATCGAAATCAATTTGAATTAA
TTAAAGCAGATTTCAATGAACAAAATCAATTAGTTGATATGGATTTTAATGAACAAAAAACTACTGTTTTCTGTCCCCGT
CTATTGGACAAAGAAAAAATTAAATGTACTTTTTCTGATCCTTTATTTCCCATTACAACCCTTGCCTTGGTTAATGATGA
ATCAGGACAAATCAATATATGGGAGATTGATTGGGAAGCCAAACAAGTACAAGAAGTGGACCAATGTTCAACGGAGTTGT
CCTTTACTAATTTTTTCTTTTTAGACCAATCGAAGTTTTATTTTCGAAAGGATAAAAAAACACTTGCTATATGGGATAAA
AAGACGCGTAGCGAGGAAACCATCAAGTTTAAAAATGAGTTAGTTGACTTTGATATATCCGACGATGGCTTTTGGATGGT
GACTGTTGAAAAACTAGCGAGTTCAATGCGCAGGGGCCCCTTTCTTTATGATAAAAACAAGTTTCGCTTATGGAATTTAG
ATCAAAGGGAAAAGCTTGATCGCTTTATTCTTCCTTTTCATGATTTGATAATCCAACTTTCACCCCAAGGCAAATTCTTA
ATTCTTCGAAATATCGATGGTTTAGTAAAGCTAAGCGTATGGAAAATAAAGAAAGGAAAATTTCTTCCTTTGTGGAAAAT
TCCCAATCATTTAAATGTAAAAGGATTGAGTTTAAAGAACACACAAAACTTGGATAGAATAAATGCTTTATTGCTTTCTC
AATTACAAAATGAAAAAAACTTTCATAAAGACATCTAA

Upstream 100 bases:

>100_bases
AGCTATAAAAATTGGGTTAAAAATATTCAAATATCTGGAATCGCTAGATCGAGGGCAAGCTAGGTTAGTGTGTAGAAAAT
GGAAGCAGCTGATCGATAAA

Downstream 100 bases:

>100_bases
ACTTATTTAGTAGTTTAAAATCATTTCCCTTAAAATAGACCAATTTTTTAGGAGAAAAATTGATTATAAAAATCACTAAT
AAAGTGGAATTTAAGAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 865; Mature: 865

Protein sequence:

>865_residues
MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP
GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN
LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL
VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW
KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG
DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL
SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI
KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR
LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK
KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL
ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI

Sequences:

>Translated_865_residues
MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP
GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN
LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL
VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW
KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG
DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL
SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI
KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR
LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK
KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL
ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI
>Mature_865_residues
MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP
GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN
LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL
VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW
KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG
DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL
SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI
KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR
LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK
KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL
ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 100815; Mature: 100815

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALM
CEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEE
ILKKTNFSFIGSDFRGIQAPGVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLE
EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWNLETFEVEKQPLETGRDWKTF
CEEECCCCCCCCCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCHHCCCCCEEEE
LLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL
EEEEECCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEE
VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYF
EEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
FERSCVEFYSLPDLEIKQDWKLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVK
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC
DKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTGDKHDEVFFRTRDKDFKLKFS
CEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEH
EQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCEEEEEEHHHHCCCCEEEE
SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKP
EEEEEEECCCCCEEEEEEEECCCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
SFEPMWMWGCRLSSNAQYCIKTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDN
CCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHCEEEEEEEECCCC
RYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPRLLDKEKIKCTFSDPLFPITT
CEEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEECCHHCCCCEEEEEECCCCCCEEE
LALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK
EEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCEEEEEEC
KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLD
CCCCCHHEEEEHHEEEEEECCCCEEEEEHHHHHHHHHCCCEEEECCCEEEECCCHHHHHH
RFILPFHDLIIQLSPQGKFLILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKN
HHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECC
TQNLDRINALLLSQLQNEKNFHKDI
CCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALM
CEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEE
ILKKTNFSFIGSDFRGIQAPGVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLE
EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWNLETFEVEKQPLETGRDWKTF
CEEECCCCCCCCCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCHHCCCCCEEEE
LLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL
EEEEECCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEE
VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYF
EEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
FERSCVEFYSLPDLEIKQDWKLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVK
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC
DKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTGDKHDEVFFRTRDKDFKLKFS
CEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEH
EQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCEEEEEEHHHHCCCCEEEE
SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKP
EEEEEEECCCCCEEEEEEEECCCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
SFEPMWMWGCRLSSNAQYCIKTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDN
CCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHCEEEEEEEECCCC
RYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPRLLDKEKIKCTFSDPLFPITT
CEEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEECCHHCCCCEEEEEECCCCCCEEE
LALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK
EEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCEEEEEEC
KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLD
CCCCCHHEEEEHHEEEEEECCCCEEEEEHHHHHHHHHCCCEEEECCCEEEECCCHHHHHH
RFILPFHDLIIQLSPQGKFLILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKN
HHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECC
TQNLDRINALLLSQLQNEKNFHKDI
CCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA