| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446370
Identifier: 46446370
GI number: 46446370
Start: 901100
End: 903697
Strand: Reverse
Name: 46446370
Synonym: pc0736
Alternate gene names: NA
Gene position: 903697-901100 (Counterclockwise)
Preceding gene: 46446372
Following gene: 46446368
Centisome position: 37.43
GC content: 33.6
Gene sequence:
>2598_bases GTGCATATTATTGAAAGCTATAATATAGGGCTTATGAATTCAGCCAAGGTGAGACAGGAAGCTACTCATTACTTGCGCAA CCCTGAAAAATTGAAAGCAGAACGGCGCTTTCTTTTAACAATTGTCAGGCTTTCGAAAGATTGCATAAAAATAAAGGTCG CGGCTGCAAATGCCTTGATGATTTTAAAAAAAACCAATTTTTCTTTTATCGGCTCTGATTTCAGAGGGATCCAAGCTCCC GGTGTTAGGCTTGCCCGAACTCTTTTGGACAAGGTTAATTTCTCAGGGGCGAATCTAAAAGGGGCGAATTTTACCGACTG CTCCTTGGAAGATACCATTCTCGATGACGCGCAACTTGAGGGTGTCCAATTTGGCAAGCTTCCTTATTTAAACCACCAAG ACAATGTACTCGCTATGGCTTTATCTCCTAATGGCAAGCATTTAGCCTCCACTGGTGCAAAAAATCTCTATGTCTGGAAT CTGGAAACATTTGAAGTTGAAAAACAACCATTAGAAACAGGAAGGGATTGGAAGACTTTTCTCCTATTCTTTCAAGATGG TCAATTTCTTTTTAAAGCTTATAGCAAGATAGGAAACCGGACTCATAAACTAAAAGTTGAAATATGGAAAACTAATCCAC TAGAAATGATTAATAGATTGATTTTTGACAATGTTAGCATTTTTTTGTTATTAGCTCTTACTCGAGATGGAACAAAGCTT GTTAGTGTAGGCGTAAAAAATGAAATTTTATGCGATGCAGAAACAGAAATTTGCCTTTGGCAAGTAGACTTCAACGAACA AAGCCTTCCTCAACTTACATTAGCTAAGAAAAAAATAATAACAGGCTTAGCAAAGAAGGCTAGCTATGCTCCCAAAATCT CTGTTATTGCCCTATATTTTTTTGAAAGAAGTTGCGTTGAATTTTACTCTCTTCCTGACTTGGAAATTAAACAAGATTGG AAGTTGCCACTGAAAATGAAAAAGAAATACAAAGTTAGCAATATGATATTTACTTCCCAAGAGAGCCAGCTTATTATAAG TATCCTTACCGGAATTAGTGAAGTTTTTGGTGAAGTTAAAGATAAAGTATATATCTGGGATATAAAAAATAAGAAAAAAA AGTTTTTATTTTTTGAAAAACGTCCTATAACTAACCTCCAATTTTTGCCAGATAGCCCATGGATGGCCTACTTTACAGGT GATAAACACGATGAAGTCTTTTTTCGCACCCGTGACAAAGATTTTAAATTAAAGTTCAGCGAACAACTTTCTGCTAAAAT CAATGATATATATCAATTATATCAACGAACCATCAGTAATAGTAGTAGTACTATAACTCAAAATTTTATTTCTAATGGTC AATTTGTCTTTCGGTCTAAAACTAACCAAATTTTTATTGCTCCCTTAAAAAATTTTGTAGGTAAAAAAGAATTTACTCTA TCTATTAGTGCTCTCCATTTTTCTTCAGATGAGCAAACAATTTATCTTTGGATGGTTGAAAATAAGTCATATTATTCTCC AGATGGACAAACAAAATGTCTTTGGAATGCTGAAAATAAACTCTATATTTATCAGACTTCTAATGGGAAAAATCTTGGGC ATAAAAACTTACAGAAACCTTCTTTTGAACCGATGTGGATGTGGGGTTGCCGCCTCTCTTCCAATGCTCAATACTGCATT AAAACATATTATCATACAAGCCCTGGCAAAAATAAAATTATTATTTCTCAAGTTGAAAATAAAGATGTGCAAAGTTCATA TATAGGAACTTTTTTCGCTTGTACTTTATCAAAAGATAATCGTTATCTCCTCTTTATTTATCGAAATCAATTTGAATTAA TTAAAGCAGATTTCAATGAACAAAATCAATTAGTTGATATGGATTTTAATGAACAAAAAACTACTGTTTTCTGTCCCCGT CTATTGGACAAAGAAAAAATTAAATGTACTTTTTCTGATCCTTTATTTCCCATTACAACCCTTGCCTTGGTTAATGATGA ATCAGGACAAATCAATATATGGGAGATTGATTGGGAAGCCAAACAAGTACAAGAAGTGGACCAATGTTCAACGGAGTTGT CCTTTACTAATTTTTTCTTTTTAGACCAATCGAAGTTTTATTTTCGAAAGGATAAAAAAACACTTGCTATATGGGATAAA AAGACGCGTAGCGAGGAAACCATCAAGTTTAAAAATGAGTTAGTTGACTTTGATATATCCGACGATGGCTTTTGGATGGT GACTGTTGAAAAACTAGCGAGTTCAATGCGCAGGGGCCCCTTTCTTTATGATAAAAACAAGTTTCGCTTATGGAATTTAG ATCAAAGGGAAAAGCTTGATCGCTTTATTCTTCCTTTTCATGATTTGATAATCCAACTTTCACCCCAAGGCAAATTCTTA ATTCTTCGAAATATCGATGGTTTAGTAAAGCTAAGCGTATGGAAAATAAAGAAAGGAAAATTTCTTCCTTTGTGGAAAAT TCCCAATCATTTAAATGTAAAAGGATTGAGTTTAAAGAACACACAAAACTTGGATAGAATAAATGCTTTATTGCTTTCTC AATTACAAAATGAAAAAAACTTTCATAAAGACATCTAA
Upstream 100 bases:
>100_bases AGCTATAAAAATTGGGTTAAAAATATTCAAATATCTGGAATCGCTAGATCGAGGGCAAGCTAGGTTAGTGTGTAGAAAAT GGAAGCAGCTGATCGATAAA
Downstream 100 bases:
>100_bases ACTTATTTAGTAGTTTAAAATCATTTCCCTTAAAATAGACCAATTTTTTAGGAGAAAAATTGATTATAAAAATCACTAAT AAAGTGGAATTTAAGAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 865; Mature: 865
Protein sequence:
>865_residues MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI
Sequences:
>Translated_865_residues MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI >Mature_865_residues MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALMILKKTNFSFIGSDFRGIQAP GVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLEGVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWN LETFEVEKQPLETGRDWKTFLLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYFFERSCVEFYSLPDLEIKQDW KLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVKDKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTG DKHDEVFFRTRDKDFKLKFSEQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKPSFEPMWMWGCRLSSNAQYCI KTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDNRYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPR LLDKEKIKCTFSDPLFPITTLALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLDRFILPFHDLIIQLSPQGKFL ILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKNTQNLDRINALLLSQLQNEKNFHKDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100815; Mature: 100815
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALM CEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEE ILKKTNFSFIGSDFRGIQAPGVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLE EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWNLETFEVEKQPLETGRDWKTF CEEECCCCCCCCCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCHHCCCCCEEEE LLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL EEEEECCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEE VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYF EEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE FERSCVEFYSLPDLEIKQDWKLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVK HHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC DKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTGDKHDEVFFRTRDKDFKLKFS CEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEH EQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCEEEEEEHHHHCCCCEEEE SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKP EEEEEEECCCCCEEEEEEEECCCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC SFEPMWMWGCRLSSNAQYCIKTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDN CCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHCEEEEEEEECCCC RYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPRLLDKEKIKCTFSDPLFPITT CEEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEECCHHCCCCEEEEEECCCCCCEEE LALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK EEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCEEEEEEC KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLD CCCCCHHEEEEHHEEEEEECCCCEEEEEHHHHHHHHHCCCEEEECCCEEEECCCHHHHHH RFILPFHDLIIQLSPQGKFLILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKN HHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECC TQNLDRINALLLSQLQNEKNFHKDI CCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MHIIESYNIGLMNSAKVRQEATHYLRNPEKLKAERRFLLTIVRLSKDCIKIKVAAANALM CEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEE ILKKTNFSFIGSDFRGIQAPGVRLARTLLDKVNFSGANLKGANFTDCSLEDTILDDAQLE EEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GVQFGKLPYLNHQDNVLAMALSPNGKHLASTGAKNLYVWNLETFEVEKQPLETGRDWKTF CEEECCCCCCCCCCCEEEEEECCCCCEECCCCCCEEEEEEEEEEEECCCHHCCCCCEEEE LLFFQDGQFLFKAYSKIGNRTHKLKVEIWKTNPLEMINRLIFDNVSIFLLLALTRDGTKL EEEEECCHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEE VSVGVKNEILCDAETEICLWQVDFNEQSLPQLTLAKKKIITGLAKKASYAPKISVIALYF EEECCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE FERSCVEFYSLPDLEIKQDWKLPLKMKKKYKVSNMIFTSQESQLIISILTGISEVFGEVK HHHHHHHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC DKVYIWDIKNKKKKFLFFEKRPITNLQFLPDSPWMAYFTGDKHDEVFFRTRDKDFKLKFS CEEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEH EQLSAKINDIYQLYQRTISNSSSTITQNFISNGQFVFRSKTNQIFIAPLKNFVGKKEFTL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCEEEEEEHHHHCCCCEEEE SISALHFSSDEQTIYLWMVENKSYYSPDGQTKCLWNAENKLYIYQTSNGKNLGHKNLQKP EEEEEEECCCCCEEEEEEEECCCEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC SFEPMWMWGCRLSSNAQYCIKTYYHTSPGKNKIIISQVENKDVQSSYIGTFFACTLSKDN CCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHCEEEEEEEECCCC RYLLFIYRNQFELIKADFNEQNQLVDMDFNEQKTTVFCPRLLDKEKIKCTFSDPLFPITT CEEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEECCHHCCCCEEEEEECCCCCCEEE LALVNDESGQINIWEIDWEAKQVQEVDQCSTELSFTNFFFLDQSKFYFRKDKKTLAIWDK EEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCEEEEEEC KTRSEETIKFKNELVDFDISDDGFWMVTVEKLASSMRRGPFLYDKNKFRLWNLDQREKLD CCCCCHHEEEEHHEEEEEECCCCEEEEEHHHHHHHHHCCCEEEECCCEEEECCCHHHHHH RFILPFHDLIIQLSPQGKFLILRNIDGLVKLSVWKIKKGKFLPLWKIPNHLNVKGLSLKN HHHCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECC TQNLDRINALLLSQLQNEKNFHKDI CCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA