| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446270
Identifier: 46446270
GI number: 46446270
Start: 779863
End: 780945
Strand: Reverse
Name: 46446270
Synonym: pc0636
Alternate gene names: NA
Gene position: 780945-779863 (Counterclockwise)
Preceding gene: 46446271
Following gene: 46446269
Centisome position: 32.34
GC content: 34.53
Gene sequence:
>1083_bases ATGTTTAGAAGCATTTGGGAAAGATATTTTGTCAGTGAATTTATTAAAGTTTTTCTTCTTTTTTTAGTTTGTTTTTATGG TCTGTATGTTCTCATTGACTATGCAAGTCATACAAGTGCTCTTCCACATCATCATATACAGCTGCGTATACGAGAACTCA TTCGCTATTATCTTTTTATTCTAGCGAGTCGAGCGGAAATTCTCATTCCGCTTGCTTTATTGATTGCATTTATTAAAACA GTTTGTACTTTAAATACTCATCAAGAGTTAGTTGCTCTGATGGCAGGCGGAATCAAACTGAAAACTTTGATGCGTCCTTT TCTTATGATTGCCTTAGCATTTGTTTGCTTACTTTATCTAAATGAACAGTTTGTTTTGCCTTCCACCCTTAAAAAATTAC GCCATCTCGAAAACGCAACAAAGCACCAAAAAAAACGGCAATTGCCGGAAATTACCGTTAAACATGTCGTTCTAGAAGAT AGATCTCTTTTACTTTATCAAAATTATGATAGTGAAAAAGAAGAATTTTTTGATGTGTACTGGATTGAATCGATCGATAG TATTTATCGAGCCAAATATTTATGCCCAAATAAAGAAATACCTGTCGGTTATTTTGTTGATCATCTTTTAAGACAGCCTA ACGGCGAACTATTACAACAACAGGCATATAGTCAATATGAATTTAAAAATTTGCTATTTAATCAAGAACTTTTGCAATCT GCTATTTTAGATCCCGATATTTTGCCTTTAACAAATCTATTTTTTCAACAGCCCAGTCTTTTCGCCAACTTAAGTGAAAA AGAAAGCAAAATTGCGACTGCATTTTACTGGAAACTTCTCATGCCTTGGCTTTGTCTGCTAGCGATTTTAGCACCAGCTC CTTCTTGCGTTCGCTTTTCGCGCCAGATACCTATTTTCTTTATTTATATTTATTCTCTATTTGGCCTAATTGCTTTTTAT ATGCTTATGGATGCGGCCCAAGTGTTAGCTAAAAGGCAAGTTCTTCCTCCTATTTGGGCTATAGGCTTACCTTTTATTCT TGTATTCAGCTTTTATAGTTATCGCTTTGCCCGCTTGAAATAA
Upstream 100 bases:
>100_bases AACAGTTTTATCTTTCTTTCGCTTTATATCTTTTACCTCTCATCCTAATCGATATCATTTCACTTTGGACACTCAATCGA ATTAGCAATGGAATTGAATA
Downstream 100 bases:
>100_bases CGATTTATCAAATGGCATGAAAATTAAAAAATAGAATTTAAAATATATTTTTACCATTAGCTATAAAATGATAATCTCAT TTTGCTTTTCAAACAAACGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MFRSIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILASRAEILIPLALLIAFIKT VCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQFVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLED RSLLLYQNYDSEKEEFFDVYWIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQS AILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFSRQIPIFFIYIYSLFGLIAFY MLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARLK
Sequences:
>Translated_360_residues MFRSIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILASRAEILIPLALLIAFIKT VCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQFVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLED RSLLLYQNYDSEKEEFFDVYWIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQS AILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFSRQIPIFFIYIYSLFGLIAFY MLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARLK >Mature_360_residues MFRSIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILASRAEILIPLALLIAFIKT VCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQFVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLED RSLLLYQNYDSEKEEFFDVYWIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQS AILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFSRQIPIFFIYIYSLFGLIAFY MLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARLK
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42386; Mature: 42386
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRSIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LASRAEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH NEQFVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLEDRSLLLYQNYDSEKEEFFDVY CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH WIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQS HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFS HCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RQIPIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARLK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFRSIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LASRAEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH NEQFVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLEDRSLLLYQNYDSEKEEFFDVY CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH WIESIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQAYSQYEFKNLLFNQELLQS HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLAILAPAPSCVRFS HCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RQIPIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSFYSYRFARLK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA