| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46446020
Identifier: 46446020
GI number: 46446020
Start: 513059
End: 515530
Strand: Reverse
Name: 46446020
Synonym: pc0386
Alternate gene names: NA
Gene position: 515530-513059 (Counterclockwise)
Preceding gene: 46446027
Following gene: 46446019
Centisome position: 21.35
GC content: 33.21
Gene sequence:
>2472_bases ATGATTCGGCTTACAATAAACGCCTCATCGGATTCAGAAATACATCTATTTGATCAATCCACAATTCTGATAGGGGCAGA TGCGAAACAAGCAGACCTTGTTTTGCCAGGAAATTCCATCCAACCCATTCACCTAAAAATTATTGATCAAAATGGTTTTT TAATTCTGATTAATCAAGCTAAAGACCCTTTTGTTTCTATTAATGGACATCCTTTTGGAAAAAAATTATTAAATTCGGGA GATGTCATTACTGTTCATCAAAATCAACTCTTATTTGAAAATCTCGCTCATACAAGCCTTGAAAACTCGAGTGATACACC TTTATTTTCTAATCATGCTCTTGATCAAAAAACGTCCGGAGAAGACCCGAATCAATCAGGCAAAATTGCATCTTCATACT CACTAAACATATCTCTGCCTTTTGAAAACGAAGTCGAAGCGTTAAGCGATAATGAATGGAATCAAACAAATTTAGATCAA TACTTAAACCTCTCCAATGATAGTACACATTCAATTAGTCCAATTTCTTCGAACAATTCTAAAAATAAAGAGCCAGGTGA AAAGAAGAGTCAAAGCCTCAAAGATGATTATCTACGAGATTTAGATGATGAAAATCAAACTAAAAAAGATACCGTATTTA ATTACACACTTACTGAATCTGGACATTTGATAAGAGCTTGGAAATGGCTTATTTTGTTCATCTTATTAATTTTGACTATC ACTGGATTTGTAGGAACCATTATTTACTTTAGATTCAGCGATAAGGCCGAAATTCAAGAAACAATTGCTTCTCAAGGAGT CGCAGATGTGGCAATGGCATTAACATACGCGAAACTATACAGACTTAAACCCCATAATCAAAATTGGGCAGATCTCGATT TCTTAAAAAACAATTTTCAAGCTATTCTAGCTGATACGCCCTCATATGGCAATCAGATCGATGCTCAAGGTCAGTTTATT TGCTGTCCTTACACATTAAGAATTTATACAAATAGCGATTTATCTCATTTCCTGTTAATTGCTCAGCCTGCACCAAGTAT TTATTATTGGTTAATTCCAAAATCAACCATCGTTGTTGATTCCAATGCAATGGAATTGCGCACATTAAAAGACCTACGCA CTTTAAATCGACTGCTCGCTAATCCAGAACCTTTAGAAGGGACCAATGGTAAAGATATTTCCGCTTTGATTAAACAAGGA ACTCTCACTCGACTAGCTACTCTTTCAACCGATCCTAATCAACAAGATTTTTCTCCACCAAAAAATTTAGGATGGATCAA ACCTGGAGCAGAAAATTTTATCTATAATTCCCCCCGGTATTTTCGTTTAGGCCATCCTTTAATACAAAAAGCAATCAATC TTGCAACCGCAAAAGGAACTAGCCAAGAAGTTTCTGCATTAAAACAAGATGTGGAAAATTTTTCTAAACTTCCTCATGCA GTGCTTTACTCAGAGCAAGGAAAAAAAACAGCTTTACAAACAAAACAAGGAATTGCCACCTTCGCTCCATCCAATAAAAT TCTTTTGGGATATCTTTTATTTAATAAACAGGGAAAAATTCAACAAGCTCATTTACTTAAAGATGAAGAAGAGATCAAAG ATCATATTTTTTTGAAAGAAAAAGAACAGATTGCATTGATTGGATCAGAAATAAATGAGAAAAATATTAAAGAAGAAAAC GAACCACTTCATATGGACCATACCACCCACGTCGATTTTAACCATCCTATCTATATCCAACTACAAGCTTTAACGCTGGC GAGAGAAAATGAACTTACTCCTCTTTCTACCGCTTTAAACCATTTAATCAATCGAGAATTACACCATCCTAGTGGACATT TTCAAACCGATTTTCAAACCCTTTCTCACTCTTATTTGATGACTGACGCCAAGCATCGACAATTACTTAAAGAAGCAATT GAAATGCTTTATCAGCAATATGAAGATATGCCGATTAATCAATTTATTGTTTTTGTTAAACAGCTTCATTTAGAGCATTT AATTATACAAAATGATAAATCCATCGGCTTTGTTGATGAAAATTGTATTCAAAATTTAGAAACAATGTTAACGCAAATAG AAAAAGCTAAATCATTAATAGAATTGGATAATCTAATTCATATTTGCAATTCATGGTTAAATTTTGATTACATCAAAGAT TCTGAAGAATTGATCAAATATCAAAACCTGGTCAGAAATAGCGTGTTAAGTCAATTAGAGAAACATCTTTTATCTCAAAC AAAACATGTTAGTGTTAAAGAGCAAGATAAAGAAATTTTAAAAAAGATTTTAAGTCACAAGCGTCTGATTAAATCAGAAG AAAAAGACTTTTTTTTAGAAGAATTTGAAGCATTGTTAACAAATAAATCTACTTTTCAAGAAGAAAATGCGGAGGCTTCA GTTTCTACTTCTACAGAAGAAAAAATAGAAATACAGCCAGACCGAACTGTTTCTGGCAATATCGAACTTTAA
Upstream 100 bases:
>100_bases ATAAAAAACCTATTTTTTAACAGCTAAATTTACATTGACGCTTCTTTTTAAATATGTTAAAAATTTTTAAAAATGTAATT AGCAAGGTATTTAGCTTCTT
Downstream 100 bases:
>100_bases TTTTTAATTAAATGCCAAAGTTTATGACAACATGCAAAATTGATCAATAAAAATCCAAAGTTTGGACATTGCTGTAAAGT TAACTTGTCTATTATTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 823; Mature: 823
Protein sequence:
>823_residues MIRLTINASSDSEIHLFDQSTILIGADAKQADLVLPGNSIQPIHLKIIDQNGFLILINQAKDPFVSINGHPFGKKLLNSG DVITVHQNQLLFENLAHTSLENSSDTPLFSNHALDQKTSGEDPNQSGKIASSYSLNISLPFENEVEALSDNEWNQTNLDQ YLNLSNDSTHSISPISSNNSKNKEPGEKKSQSLKDDYLRDLDDENQTKKDTVFNYTLTESGHLIRAWKWLILFILLILTI TGFVGTIIYFRFSDKAEIQETIASQGVADVAMALTYAKLYRLKPHNQNWADLDFLKNNFQAILADTPSYGNQIDAQGQFI CCPYTLRIYTNSDLSHFLLIAQPAPSIYYWLIPKSTIVVDSNAMELRTLKDLRTLNRLLANPEPLEGTNGKDISALIKQG TLTRLATLSTDPNQQDFSPPKNLGWIKPGAENFIYNSPRYFRLGHPLIQKAINLATAKGTSQEVSALKQDVENFSKLPHA VLYSEQGKKTALQTKQGIATFAPSNKILLGYLLFNKQGKIQQAHLLKDEEEIKDHIFLKEKEQIALIGSEINEKNIKEEN EPLHMDHTTHVDFNHPIYIQLQALTLARENELTPLSTALNHLINRELHHPSGHFQTDFQTLSHSYLMTDAKHRQLLKEAI EMLYQQYEDMPINQFIVFVKQLHLEHLIIQNDKSIGFVDENCIQNLETMLTQIEKAKSLIELDNLIHICNSWLNFDYIKD SEELIKYQNLVRNSVLSQLEKHLLSQTKHVSVKEQDKEILKKILSHKRLIKSEEKDFFLEEFEALLTNKSTFQEENAEAS VSTSTEEKIEIQPDRTVSGNIEL
Sequences:
>Translated_823_residues MIRLTINASSDSEIHLFDQSTILIGADAKQADLVLPGNSIQPIHLKIIDQNGFLILINQAKDPFVSINGHPFGKKLLNSG DVITVHQNQLLFENLAHTSLENSSDTPLFSNHALDQKTSGEDPNQSGKIASSYSLNISLPFENEVEALSDNEWNQTNLDQ YLNLSNDSTHSISPISSNNSKNKEPGEKKSQSLKDDYLRDLDDENQTKKDTVFNYTLTESGHLIRAWKWLILFILLILTI TGFVGTIIYFRFSDKAEIQETIASQGVADVAMALTYAKLYRLKPHNQNWADLDFLKNNFQAILADTPSYGNQIDAQGQFI CCPYTLRIYTNSDLSHFLLIAQPAPSIYYWLIPKSTIVVDSNAMELRTLKDLRTLNRLLANPEPLEGTNGKDISALIKQG TLTRLATLSTDPNQQDFSPPKNLGWIKPGAENFIYNSPRYFRLGHPLIQKAINLATAKGTSQEVSALKQDVENFSKLPHA VLYSEQGKKTALQTKQGIATFAPSNKILLGYLLFNKQGKIQQAHLLKDEEEIKDHIFLKEKEQIALIGSEINEKNIKEEN EPLHMDHTTHVDFNHPIYIQLQALTLARENELTPLSTALNHLINRELHHPSGHFQTDFQTLSHSYLMTDAKHRQLLKEAI EMLYQQYEDMPINQFIVFVKQLHLEHLIIQNDKSIGFVDENCIQNLETMLTQIEKAKSLIELDNLIHICNSWLNFDYIKD SEELIKYQNLVRNSVLSQLEKHLLSQTKHVSVKEQDKEILKKILSHKRLIKSEEKDFFLEEFEALLTNKSTFQEENAEAS VSTSTEEKIEIQPDRTVSGNIEL >Mature_823_residues MIRLTINASSDSEIHLFDQSTILIGADAKQADLVLPGNSIQPIHLKIIDQNGFLILINQAKDPFVSINGHPFGKKLLNSG DVITVHQNQLLFENLAHTSLENSSDTPLFSNHALDQKTSGEDPNQSGKIASSYSLNISLPFENEVEALSDNEWNQTNLDQ YLNLSNDSTHSISPISSNNSKNKEPGEKKSQSLKDDYLRDLDDENQTKKDTVFNYTLTESGHLIRAWKWLILFILLILTI TGFVGTIIYFRFSDKAEIQETIASQGVADVAMALTYAKLYRLKPHNQNWADLDFLKNNFQAILADTPSYGNQIDAQGQFI CCPYTLRIYTNSDLSHFLLIAQPAPSIYYWLIPKSTIVVDSNAMELRTLKDLRTLNRLLANPEPLEGTNGKDISALIKQG TLTRLATLSTDPNQQDFSPPKNLGWIKPGAENFIYNSPRYFRLGHPLIQKAINLATAKGTSQEVSALKQDVENFSKLPHA VLYSEQGKKTALQTKQGIATFAPSNKILLGYLLFNKQGKIQQAHLLKDEEEIKDHIFLKEKEQIALIGSEINEKNIKEEN EPLHMDHTTHVDFNHPIYIQLQALTLARENELTPLSTALNHLINRELHHPSGHFQTDFQTLSHSYLMTDAKHRQLLKEAI EMLYQQYEDMPINQFIVFVKQLHLEHLIIQNDKSIGFVDENCIQNLETMLTQIEKAKSLIELDNLIHICNSWLNFDYIKD SEELIKYQNLVRNSVLSQLEKHLLSQTKHVSVKEQDKEILKKILSHKRLIKSEEKDFFLEEFEALLTNKSTFQEENAEAS VSTSTEEKIEIQPDRTVSGNIEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93545; Mature: 93545
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLTINASSDSEIHLFDQSTILIGADAKQADLVLPGNSIQPIHLKIIDQNGFLILINQA CEEEEEECCCCCEEEEEECCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCEEEEEECC KDPFVSINGHPFGKKLLNSGDVITVHQNQLLFENLAHTSLENSSDTPLFSNHALDQKTSG CCCEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC EDPNQSGKIASSYSLNISLPFENEVEALSDNEWNQTNLDQYLNLSNDSTHSISPISSNNS CCCCCCCCEEEEEEEEEECCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC KNKEPGEKKSQSLKDDYLRDLDDENQTKKDTVFNYTLTESGHLIRAWKWLILFILLILTI CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH TGFVGTIIYFRFSDKAEIQETIASQGVADVAMALTYAKLYRLKPHNQNWADLDFLKNNFQ HHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHCCCE AILADTPSYGNQIDAQGQFICCPYTLRIYTNSDLSHFLLIAQPAPSIYYWLIPKSTIVVD EEEECCCCCCCEECCCCCEEECCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEC SNAMELRTLKDLRTLNRLLANPEPLEGTNGKDISALIKQGTLTRLATLSTDPNQQDFSPP CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCCCCCCCCC KNLGWIKPGAENFIYNSPRYFRLGHPLIQKAINLATAKGTSQEVSALKQDVENFSKLPHA CCCCCCCCCCCCCEECCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE VLYSEQGKKTALQTKQGIATFAPSNKILLGYLLFNKQGKIQQAHLLKDEEEIKDHIFLKE EEECCCCCHHHHHHHCCCEEECCCCCEEEEEEEECCCCCCHHHHHCCCHHHHHHHEEECC KEQIALIGSEINEKNIKEENEPLHMDHTTHVDFNHPIYIQLQALTLARENELTPLSTALN CCEEEEECCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEEEEEEEECCCCCCHHHHHHH HLINRELHHPSGHFQTDFQTLSHSYLMTDAKHRQLLKEAIEMLYQQYEDMPINQFIVFVK HHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH QLHLEHLIIQNDKSIGFVDENCIQNLETMLTQIEKAKSLIELDNLIHICNSWLNFDYIKD HHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SEELIKYQNLVRNSVLSQLEKHLLSQTKHVSVKEQDKEILKKILSHKRLIKSEEKDFFLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH EFEALLTNKSTFQEENAEASVSTSTEEKIEIQPDRTVSGNIEL HHHHHHCCCHHHHHCCCCCEECCCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure MIRLTINASSDSEIHLFDQSTILIGADAKQADLVLPGNSIQPIHLKIIDQNGFLILINQA CEEEEEECCCCCEEEEEECCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCEEEEEECC KDPFVSINGHPFGKKLLNSGDVITVHQNQLLFENLAHTSLENSSDTPLFSNHALDQKTSG CCCEEEECCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC EDPNQSGKIASSYSLNISLPFENEVEALSDNEWNQTNLDQYLNLSNDSTHSISPISSNNS CCCCCCCCEEEEEEEEEECCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC KNKEPGEKKSQSLKDDYLRDLDDENQTKKDTVFNYTLTESGHLIRAWKWLILFILLILTI CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH TGFVGTIIYFRFSDKAEIQETIASQGVADVAMALTYAKLYRLKPHNQNWADLDFLKNNFQ HHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHCCCE AILADTPSYGNQIDAQGQFICCPYTLRIYTNSDLSHFLLIAQPAPSIYYWLIPKSTIVVD EEEECCCCCCCEECCCCCEEECCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEC SNAMELRTLKDLRTLNRLLANPEPLEGTNGKDISALIKQGTLTRLATLSTDPNQQDFSPP CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCCCCCCCCC KNLGWIKPGAENFIYNSPRYFRLGHPLIQKAINLATAKGTSQEVSALKQDVENFSKLPHA CCCCCCCCCCCCCEECCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE VLYSEQGKKTALQTKQGIATFAPSNKILLGYLLFNKQGKIQQAHLLKDEEEIKDHIFLKE EEECCCCCHHHHHHHCCCEEECCCCCEEEEEEEECCCCCCHHHHHCCCHHHHHHHEEECC KEQIALIGSEINEKNIKEENEPLHMDHTTHVDFNHPIYIQLQALTLARENELTPLSTALN CCEEEEECCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEEEEEEEECCCCCCHHHHHHH HLINRELHHPSGHFQTDFQTLSHSYLMTDAKHRQLLKEAIEMLYQQYEDMPINQFIVFVK HHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH QLHLEHLIIQNDKSIGFVDENCIQNLETMLTQIEKAKSLIELDNLIHICNSWLNFDYIKD HHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SEELIKYQNLVRNSVLSQLEKHLLSQTKHVSVKEQDKEILKKILSHKRLIKSEEKDFFLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH EFEALLTNKSTFQEENAEASVSTSTEEKIEIQPDRTVSGNIEL HHHHHHCCCHHHHHCCCCCEECCCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA