Click here to switch to the map view.

The map label for this gene is sctS

Identifier: 46445835

GI number: 46445835

Start: 296692

End: 296928

Strand: Reverse

Name: sctS

Synonym: pc0201

Alternate gene names: NA

Gene position: 296928-296692 (Counterclockwise)

Preceding gene: 46445836

Following gene: 46445834

Centisome position: 12.3

GC content: 39.24

Gene sequence:

>237_bases
ATGTTTCAAAGCCAAGTGGTTCAACTTGCTTACCAAGGAATGCTATTGATTCTGATTTTATCTGCTCCTCCTATATTAGT
GAGTATGTTTTTTGGAATTATTGTGGCTATCTTTCAGGCTGCCACGCAAATTCAAGAGCAAACCTTATCCTTTACAATTA
AACTAGTTGCCGTGACGTTAACTTTGATGTTTCTTGGGGGGATGGCTTGGAGCCCAAATCATGTCTTTTGCCAATGA

Upstream 100 bases:

>100_bases
TTTCAATGCCTTTAAAGCTCTTTTTACTTGTGATGTTAGATGGTTGGACCATCCTCATCGAAGGCTTAGTCAAAACATTT
CAATAGCGGAGTAAAAATTT

Downstream 100 bases:

>100_bases
CATCTTTGTTAATTTCCCTCAATGGAGTGTCCAAAGTGCTCGTTAAAGCATCAGAAACTTTTCAATTTCAGGATGTGAGC
CGTCATGACCGATGACTACG

Product: type III secretion inner membrane protein SctS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTLTLMFLGGMAWSPNHVFCQ

Sequences:

>Translated_78_residues
MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTLTLMFLGGMAWSPNHVFCQ
>Mature_78_residues
MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTLTLMFLGGMAWSPNHVFCQ

Specific function: Unknown

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8621; Mature: 8621

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTL
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMFLGGMAWSPNHVFCQ
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTL
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMFLGGMAWSPNHVFCQ
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA