Click here to switch to the map view.

The map label for this gene is yscT [H]

Identifier: 46445834

GI number: 46445834

Start: 295765

End: 296607

Strand: Reverse

Name: yscT [H]

Synonym: pc0200

Alternate gene names: 46445834

Gene position: 296607-295765 (Counterclockwise)

Preceding gene: 46445835

Following gene: 46445831

Centisome position: 12.28

GC content: 34.52

Gene sequence:

>843_bases
ATGACCGATGACTACGTGACACTTTATATCAACACGGCTTTTTCTGTTTATGATCCGCTGGCTTTTTTTTCTTTGTTATT
TCTTTTTTTTGGTCGTATGTTGCCAATCATTGCACTTGCCCCCTTTTTTGGAGCCCGAGTTCTCCCTCACCCCGTTAAAA
TTACGCTAGCAATTTCTTTTTTTGTAATTTTTTTACCTCAACTTATTTTTGTTACAACGACACCCATCACATTTAATCTT
TTACTTGTTCTTTACTTTTTTAAAGAACTGTTTGTAGGGTTGTTGTTAGGATACCTTATCAGTATACCCTTTATCATCGT
GCAAAACTGTGGAATTTTAATTGACCATCAAAGAGGAGGATCTAGTTTAATGATCAATGATCCGACGTTGCAAAATCAAT
CCTCCCCTTTGGGAACACTTTTTAACCTCGTTTTGATTTATCTTTTTTTTATGATCGATGGTCCTTTCATGATTTTAGAT
ATTATTTCTCAATCCTATTCAATTTTACCTCCCGATAAATTTCTAACAGCCAAATTTTTTACAATGAATTCAAATATTGT
CATTGATGTTATGAAAATAGTGGGAAAAGTCATGATCTTGAGCACCCAGCTAGCGGCTCCTGCTTTAATCATGATCCTGA
TGACTGACTTTTTCTTAGGAATAGCCAACCGATTGGCACCTCAAGTTCAAATTACTTTTTTAGGAATGCCTCTTAAATCA
CTTCTTGCTTTAGCAATTGTTTTTTTTGGTTGGCAATTATTTTTAAAACAAATAGTAGACGAAAGCTATGTTTGGGTTAA
TTATCTCTACAAATTGCTAGATCAGTTCCAACCCGCCTACTAA

Upstream 100 bases:

>100_bases
TGTCTTTTGCCAATGACATCTTTGTTAATTTCCCTCAATGGAGTGTCCAAAGTGCTCGTTAAAGCATCAGAAACTTTTCA
ATTTCAGGATGTGAGCCGTC

Downstream 100 bases:

>100_bases
AGATAAATCCACAGCAGCTTTTTAAATTCTAAAAGAGAAATCGAAACCTTTGACTAGTTTGCTAATGCTTCAGTAAGCAA
AACAATTTTATTGATTAGAC

Product: putative type III secretion inner membrane protein SctT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTDDYVTLYINTAFSVYDPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNL
LLVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFMIDGPFMILD
IISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKS
LLALAIVFFGWQLFLKQIVDESYVWVNYLYKLLDQFQPAY

Sequences:

>Translated_280_residues
MTDDYVTLYINTAFSVYDPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNL
LLVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFMIDGPFMILD
IISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKS
LLALAIVFFGWQLFLKQIVDESYVWVNYLYKLLDQFQPAY
>Mature_279_residues
TDDYVTLYINTAFSVYDPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISFFVIFLPQLIFVTTTPITFNLL
LVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGGSSLMINDPTLQNQSSPLGTLFNLVLIYLFFMIDGPFMILDI
ISQSYSILPPDKFLTAKFFTMNSNIVIDVMKIVGKVMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKSL
LALAIVFFGWQLFLKQIVDESYVWVNYLYKLLDQFQPAY

Specific function: Component of the yop secretion machinery [H]

COG id: COG4791

COG function: function code U; Type III secretory pathway, component EscT

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002010
- InterPro:   IPR006304 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 31785; Mature: 31654

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDYVTLYINTAFSVYDPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISF
CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FVIFLPQLIFVTTTPITFNLLLVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
SSLMINDPTLQNQSSPLGTLFNLVLIYLFFMIDGPFMILDIISQSYSILPPDKFLTAKFF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHEEEEE
TMNSNIVIDVMKIVGKVMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKS
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
LLALAIVFFGWQLFLKQIVDESYVWVNYLYKLLDQFQPAY
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDDYVTLYINTAFSVYDPLAFFSLLFLFFGRMLPIIALAPFFGARVLPHPVKITLAISF
CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FVIFLPQLIFVTTTPITFNLLLVLYFFKELFVGLLLGYLISIPFIIVQNCGILIDHQRGG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
SSLMINDPTLQNQSSPLGTLFNLVLIYLFFMIDGPFMILDIISQSYSILPPDKFLTAKFF
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHEEEEE
TMNSNIVIDVMKIVGKVMILSTQLAAPALIMILMTDFFLGIANRLAPQVQITFLGMPLKS
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
LLALAIVFFGWQLFLKQIVDESYVWVNYLYKLLDQFQPAY
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9746557; 9748454; 11586360 [H]