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The map label for this gene is yscR [H]

Identifier: 46445836

GI number: 46445836

Start: 296943

End: 297914

Strand: Reverse

Name: yscR [H]

Synonym: pc0202

Alternate gene names: 46445836

Gene position: 297914-296943 (Counterclockwise)

Preceding gene: 46445837

Following gene: 46445835

Centisome position: 12.34

GC content: 37.96

Gene sequence:

>972_bases
ATGTATAAATATAAACACATTTCCTTTAAATCCCTTCTTTGTTTGCTAGGGCTTCTCGTTTTATTTGGGCTAGCACCAGA
TACTGTTTATTCGCAAACTAATTCCACTTCTACTTCTCCAACGACGAGTACAACTCAATCAACAATTCCAAATTCTTCAG
GAAGGTCTACAACAAGTGTCAGAACGACGCCGCGCCCCTTAAAACCTATTCCACGCCCTGCTTACAAACCAGAAAAACCA
ACTCCGCTAACTGACGAACAAAAGGCTTATCAAGCCACAGAGGCACAAATTAGTGAATTAAAACGACCCTCATTGATTAC
ACAAGCTGTTTTACTATCCTTGCTTTCGCTCCTTCCCTTCATTATCATGATATTAACTTCATTTTTAAAAATTGTTGTGG
TGTTGTCTTTATTAAGAACAGCTTTAGGTGTTCAACAAGCGCCTCCTAACCAAATTATCAATGGTGTGGCATTTTTATTG
AGTTTATTCATCATGTATCCCACAGCAATAAAAATGTATGATGCTGCACAAACTGCTATCAATCAACCAAACGTACCCGA
ATCTTTTCTTTCCCCAGGCTCTTCTACTTATGTGATCGAGGTTGCTTCTGCAGCCAGCGGACCCATGAAAGAATACCTAA
AACGAAATAGTTCTTCTCGCCATCAAGCTTTATTTTATAGGTTGGTGTATAGAGGTTTGCCTGAAGATTATCGTGAAACT
TTAAAACCCGATGATTTTATTGTTCTTGTTCCTTCCTATATAACAGGACAATTGAAAGATGCTTTTGAAATTGGTGTGTT
AATTTATATCCCATTTTTTGTAATCGATCTTGTCACCTCAAACATTCTACTGGCGATGGGAATGATGATGCTATCACCTG
TGACAATTTCAATGCCTTTAAAGCTCTTTTTACTTGTGATGTTAGATGGTTGGACCATCCTCATCGAAGGCTTAGTCAAA
ACATTTCAATAG

Upstream 100 bases:

>100_bases
CGTTGGCAGGTTTTAGAAAAAGCTTTTGAAAGTTTAGTCAAAATTCCTGTAGAACAATCTCCCATAGAACCTCCCGCACA
AAGTAGTTAAGGTATTTTCC

Downstream 100 bases:

>100_bases
CGGAGTAAAAATTTATGTTTCAAAGCCAAGTGGTTCAACTTGCTTACCAAGGAATGCTATTGATTCTGATTTTATCTGCT
CCTCCTATATTAGTGAGTAT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIPNSSGRSTTSVRTTPRPLKPIPRPAYKPEKP
TPLTDEQKAYQATEAQISELKRPSLITQAVLLSLLSLLPFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLL
SLFIMYPTAIKMYDAAQTAINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRET
LKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPLKLFLLVMLDGWTILIEGLVK
TFQ

Sequences:

>Translated_323_residues
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIPNSSGRSTTSVRTTPRPLKPIPRPAYKPEKP
TPLTDEQKAYQATEAQISELKRPSLITQAVLLSLLSLLPFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLL
SLFIMYPTAIKMYDAAQTAINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRET
LKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPLKLFLLVMLDGWTILIEGLVK
TFQ
>Mature_323_residues
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIPNSSGRSTTSVRTTPRPLKPIPRPAYKPEKP
TPLTDEQKAYQATEAQISELKRPSLITQAVLLSLLSLLPFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLL
SLFIMYPTAIKMYDAAQTAINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRET
LKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPLKLFLLVMLDGWTILIEGLVK
TFQ

Specific function: Plays A Role In The Flagellum-Specific Transport System. [C]

COG id: COG1338

COG function: function code NU; Flagellar biosynthesis pathway, component FliP

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=213, Percent_Identity=37.0892018779343, Blast_Score=147, Evalue=7e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 35766; Mature: 35766

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIPNSSGRSTTSV
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
RTTPRPLKPIPRPAYKPEKPTPLTDEQKAYQATEAQISELKRPSLITQAVLLSLLSLLPF
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQTAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRET
CCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
LKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPL
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KLFLLVMLDGWTILIEGLVKTFQ
HHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIPNSSGRSTTSV
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
RTTPRPLKPIPRPAYKPEKPTPLTDEQKAYQATEAQISELKRPSLITQAVLLSLLSLLPF
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQTAI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRET
CCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
LKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPL
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KLFLLVMLDGWTILIEGLVKTFQ
HHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]