| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445698
Identifier: 46445698
GI number: 46445698
Start: 121198
End: 122781
Strand: Reverse
Name: 46445698
Synonym: pc0064
Alternate gene names: NA
Gene position: 122781-121198 (Counterclockwise)
Preceding gene: 46445699
Following gene: 46445697
Centisome position: 5.09
GC content: 34.72
Gene sequence:
>1584_bases ATGAATTTTACTTCTGCCGTTTTTCAAGATAGGCTACCAGTACAGTGGAGTACTCTATCTTCAAATATGAAAATTCTTGT TAAAGAGTTGGCAGAAACTGCAAAAGAAACTGTTAGCTTACCTTCGCTAAAAACTAAAAAAGCTTTTTTTAAAGCGATTC AAGAAAAGCAGCGCAATTTAAGAAATTCTTATCATAACAGCTTTTGGGGCCATGCTATTAAGCATTTGGAATGTTTTGAA GATTGGGAGTTTACATACCTAAATAACCCCTCCATTTATGTAGAATTCTTAAATAGTCAAAGAATTACCCATCAGGCCGC ACGCACACAATTAAAAATATACGAAACTGCTCATAATATTGCTCAAATAATCCTGCAACATAGCAGTAGCTTTCAATGGA AAAAAACCTGCGCTTTACAACTGATGGTATGCGACATGTGGAATACGTTTGTTGCTTCATCTAGTTTCTGTACGGCTAGC CATTGTTTACCACCCATTGCTAAGTGGGCAGAAGATGAGATAGGTCATTGGGCACTTTTCAAGCATTCTATTAAAAAAGA GCGTGCTATTTCTATAAACGGACTAGAAGACTCTATTCCTATTGTTTCTTTTCCTTTATCTTATTCTTCTAAAGGAATAT TAAGTTGGCTTGTATTAGCCCGTGAAACTGCTCACACTATTTTGGAAACAAATCCAAAAGCTAAAAAAATTTTATCAAAT GCCATTAAGAAAGACATTTATCAAGCTTTGGAATATTACCCAGAGGATATAAAGAAAAATTGGGCTAACTACTGGGGTAA CAGGTTTAGCGAGATCGGTGCTGATGTGATGGCTATTCTATATATGGGTCCGGCTGCTGCAATTGGCTTAATTGCATTTT TGAGATGTCATCGACCCGATCAGACTTTATCTAATAACATAGATTTAAATGATTCTCATCTGGCCGGTACTTTAAGAGGA TTGCTGGTTGCTCATGCAGTCTCTTACCTAAATATCTCAGTGTTCGCAAAAACATGTTGGGTAGATTATTTACTTCATGA GGTAAAAAAGAATTTTGACAAAACAAATTGGGAGTTTGCGAATATTTGTGCTAGACAAGCAGCTAAAACAATCATGCATA CTCCCATCATTGGCAATCTATCACTAAAAGATATCAAATGTTGGAGTAACGAAGATGAAAATCTTGTTGCTTACTATTTA GACGGCACAAGCTTAAGCAAAGAGTTTATTCATTATAAGGCTCCTCATATTATTGCTAGTGCTAATTTACATCTTCTTTT AAAAGTGCAGTTACATGTTTCAAATGATGGCCGAATTGGTCATATATTTAATCAAATGATTGACCATCTATACAAAAAAG GGCAAGCGCAAACAAAAAATCGAAATTGTTTAAGTTGTTCTATTACTCAAAGAGATATTTTTCCTTATTGTCCAGCACCG GCACAAGAAACAAGTCATTCCAATCCTATAGCGAAAGTTAAAAAAATCCAGGCTAAAAATGCAATAGATCCATTGATAGT TGTAGCAATAGTAGTCATATTTTTTGGAGTAATAATACTCACAGAAAATAGTAAAAAAGAGTAA
Upstream 100 bases:
>100_bases AAGTTAAAATTTTTAAATTAAAAAATAATTTTTATTTTGCTGAAAATTACAAGATTTTCCTCATATATTTTTTTCAAATA AAATCAGTATCAAGGGCTAT
Downstream 100 bases:
>100_bases TAGCATAGCTGAGCAATAAATGGCTTGAGGCTCATCATGCAAAAATCAAGTTAGATTCAACCTTGCATGTAGTTAAAAAA GGTTACAGGCCGTCTCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MNFTSAVFQDRLPVQWSTLSSNMKILVKELAETAKETVSLPSLKTKKAFFKAIQEKQRNLRNSYHNSFWGHAIKHLECFE DWEFTYLNNPSIYVEFLNSQRITHQAARTQLKIYETAHNIAQIILQHSSSFQWKKTCALQLMVCDMWNTFVASSSFCTAS HCLPPIAKWAEDEIGHWALFKHSIKKERAISINGLEDSIPIVSFPLSYSSKGILSWLVLARETAHTILETNPKAKKILSN AIKKDIYQALEYYPEDIKKNWANYWGNRFSEIGADVMAILYMGPAAAIGLIAFLRCHRPDQTLSNNIDLNDSHLAGTLRG LLVAHAVSYLNISVFAKTCWVDYLLHEVKKNFDKTNWEFANICARQAAKTIMHTPIIGNLSLKDIKCWSNEDENLVAYYL DGTSLSKEFIHYKAPHIIASANLHLLLKVQLHVSNDGRIGHIFNQMIDHLYKKGQAQTKNRNCLSCSITQRDIFPYCPAP AQETSHSNPIAKVKKIQAKNAIDPLIVVAIVVIFFGVIILTENSKKE
Sequences:
>Translated_527_residues MNFTSAVFQDRLPVQWSTLSSNMKILVKELAETAKETVSLPSLKTKKAFFKAIQEKQRNLRNSYHNSFWGHAIKHLECFE DWEFTYLNNPSIYVEFLNSQRITHQAARTQLKIYETAHNIAQIILQHSSSFQWKKTCALQLMVCDMWNTFVASSSFCTAS HCLPPIAKWAEDEIGHWALFKHSIKKERAISINGLEDSIPIVSFPLSYSSKGILSWLVLARETAHTILETNPKAKKILSN AIKKDIYQALEYYPEDIKKNWANYWGNRFSEIGADVMAILYMGPAAAIGLIAFLRCHRPDQTLSNNIDLNDSHLAGTLRG LLVAHAVSYLNISVFAKTCWVDYLLHEVKKNFDKTNWEFANICARQAAKTIMHTPIIGNLSLKDIKCWSNEDENLVAYYL DGTSLSKEFIHYKAPHIIASANLHLLLKVQLHVSNDGRIGHIFNQMIDHLYKKGQAQTKNRNCLSCSITQRDIFPYCPAP AQETSHSNPIAKVKKIQAKNAIDPLIVVAIVVIFFGVIILTENSKKE >Mature_527_residues MNFTSAVFQDRLPVQWSTLSSNMKILVKELAETAKETVSLPSLKTKKAFFKAIQEKQRNLRNSYHNSFWGHAIKHLECFE DWEFTYLNNPSIYVEFLNSQRITHQAARTQLKIYETAHNIAQIILQHSSSFQWKKTCALQLMVCDMWNTFVASSSFCTAS HCLPPIAKWAEDEIGHWALFKHSIKKERAISINGLEDSIPIVSFPLSYSSKGILSWLVLARETAHTILETNPKAKKILSN AIKKDIYQALEYYPEDIKKNWANYWGNRFSEIGADVMAILYMGPAAAIGLIAFLRCHRPDQTLSNNIDLNDSHLAGTLRG LLVAHAVSYLNISVFAKTCWVDYLLHEVKKNFDKTNWEFANICARQAAKTIMHTPIIGNLSLKDIKCWSNEDENLVAYYL DGTSLSKEFIHYKAPHIIASANLHLLLKVQLHVSNDGRIGHIFNQMIDHLYKKGQAQTKNRNCLSCSITQRDIFPYCPAP AQETSHSNPIAKVKKIQAKNAIDPLIVVAIVVIFFGVIILTENSKKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59927; Mature: 59927
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFTSAVFQDRLPVQWSTLSSNMKILVKELAETAKETVSLPSLKTKKAFFKAIQEKQRNL CCCHHHHHHCCCCCEEHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RNSYHNSFWGHAIKHLECFEDWEFTYLNNPSIYVEFLNSQRITHQAARTQLKIYETAHNI HHHHCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH AQIILQHSSSFQWKKTCALQLMVCDMWNTFVASSSFCTASHCLPPIAKWAEDEIGHWALF HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHCCCHHHHH KHSIKKERAISINGLEDSIPIVSFPLSYSSKGILSWLVLARETAHTILETNPKAKKILSN HHHHHHCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AIKKDIYQALEYYPEDIKKNWANYWGNRFSEIGADVMAILYMGPAAAIGLIAFLRCHRPD HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC QTLSNNIDLNDSHLAGTLRGLLVAHAVSYLNISVFAKTCWVDYLLHEVKKNFDKTNWEFA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH NICARQAAKTIMHTPIIGNLSLKDIKCWSNEDENLVAYYLDGTSLSKEFIHYKAPHIIAS HHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE ANLHLLLKVQLHVSNDGRIGHIFNQMIDHLYKKGQAQTKNRNCLSCSITQRDIFPYCPAP CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC AQETSHSNPIAKVKKIQAKNAIDPLIVVAIVVIFFGVIILTENSKKE CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCC >Mature Secondary Structure MNFTSAVFQDRLPVQWSTLSSNMKILVKELAETAKETVSLPSLKTKKAFFKAIQEKQRNL CCCHHHHHHCCCCCEEHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RNSYHNSFWGHAIKHLECFEDWEFTYLNNPSIYVEFLNSQRITHQAARTQLKIYETAHNI HHHHCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH AQIILQHSSSFQWKKTCALQLMVCDMWNTFVASSSFCTASHCLPPIAKWAEDEIGHWALF HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHCCCHHHHH KHSIKKERAISINGLEDSIPIVSFPLSYSSKGILSWLVLARETAHTILETNPKAKKILSN HHHHHHCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AIKKDIYQALEYYPEDIKKNWANYWGNRFSEIGADVMAILYMGPAAAIGLIAFLRCHRPD HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC QTLSNNIDLNDSHLAGTLRGLLVAHAVSYLNISVFAKTCWVDYLLHEVKKNFDKTNWEFA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH NICARQAAKTIMHTPIIGNLSLKDIKCWSNEDENLVAYYLDGTSLSKEFIHYKAPHIIAS HHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE ANLHLLLKVQLHVSNDGRIGHIFNQMIDHLYKKGQAQTKNRNCLSCSITQRDIFPYCPAP CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC AQETSHSNPIAKVKKIQAKNAIDPLIVVAIVVIFFGVIILTENSKKE CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA