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The map label for this gene is yobU [H]

Identifier: 46445699

GI number: 46445699

Start: 123045

End: 123593

Strand: Reverse

Name: yobU [H]

Synonym: pc0065

Alternate gene names: 46445699

Gene position: 123593-123045 (Counterclockwise)

Preceding gene: 46445700

Following gene: 46445698

Centisome position: 5.12

GC content: 33.88

Gene sequence:

>549_bases
ATGGTTGAAGAAATCATTAAGCAGTCAAAAATACTATTGGAAAGAATAATGCAGACAATTTTAATCTCCAAACCTCAAAT
AAAACTAGTTGGAGTTAGTGTTAGAACTAGCTATAAACAAGAATTAGATAAAATGGAAAGCGCTATTTTTCCTTGTGTAA
AACGCTATTTTCACGAAAAGCTTGCTGATAAAATTCTTCATAGAATAAAGCCGGGGACAACCTTTTACGTTTATACAGAT
TATGAAAGTGATTATAAAGGCTCTTATACCTATTTTATAGGAGAAGAAGTTCTCTTATTTGATGATCAACTATCTACAGA
ATTTCAAACACTACTCATTCCTATGCAGCAATATGCAAAATTTACAACGGCGCCAGCTCCCATGCCTGATGTGATTGTGA
ATGCATGGAATTATATCTGGAAAATGTCAGCCTCAGAGCTAGGCGGAGAGCGCCGATATAATGTAGATTTTGAAATTTAT
GATGAAAGAGCCACCGATCGTCAAAATATTGTTTTAGATATTTATGTGGGAATTAAACAGCTTACCTAA

Upstream 100 bases:

>100_bases
TAAAACAAAAACAACCACACTTTATTCCTTATGCTCTTTTACAAACAGCAGTAAAGTTATTGGGATATCGTTGCGGCCAA
GCATCTCTTTACGCCCCCCT

Downstream 100 bases:

>100_bases
TTTAAATATGAATACTTATTTATATAAGTGAATTAAAATTTCAAATAGATAAAAAATTAGAGGAAAACATTAAAGAATTT
TTTATTCCTTTCACTTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MVEEIIKQSKILLERIMQTILISKPQIKLVGVSVRTSYKQELDKMESAIFPCVKRYFHEKLADKILHRIKPGTTFYVYTD
YESDYKGSYTYFIGEEVLLFDDQLSTEFQTLLIPMQQYAKFTTAPAPMPDVIVNAWNYIWKMSASELGGERRYNVDFEIY
DERATDRQNIVLDIYVGIKQLT

Sequences:

>Translated_182_residues
MVEEIIKQSKILLERIMQTILISKPQIKLVGVSVRTSYKQELDKMESAIFPCVKRYFHEKLADKILHRIKPGTTFYVYTD
YESDYKGSYTYFIGEEVLLFDDQLSTEFQTLLIPMQQYAKFTTAPAPMPDVIVNAWNYIWKMSASELGGERRYNVDFEIY
DERATDRQNIVLDIYVGIKQLT
>Mature_182_residues
MVEEIIKQSKILLERIMQTILISKPQIKLVGVSVRTSYKQELDKMESAIFPCVKRYFHEKLADKILHRIKPGTTFYVYTD
YESDYKGSYTYFIGEEVLLFDDQLSTEFQTLLIPMQQYAKFTTAPAPMPDVIVNAWNYIWKMSASELGGERRYNVDFEIY
DERATDRQNIVLDIYVGIKQLT

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 21365; Mature: 21365

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEEIIKQSKILLERIMQTILISKPQIKLVGVSVRTSYKQELDKMESAIFPCVKRYFHEK
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADKILHRIKPGTTFYVYTDYESDYKGSYTYFIGEEVLLFDDQLSTEFQTLLIPMQQYAK
HHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHH
FTTAPAPMPDVIVNAWNYIWKMSASELGGERRYNVDFEIYDERATDRQNIVLDIYVGIKQ
HCCCCCCCHHHHHHHHHHHHCCCHHHCCCCEEECCCEEEECCCCCCCCCEEEEEEECCCC
LT
CC
>Mature Secondary Structure
MVEEIIKQSKILLERIMQTILISKPQIKLVGVSVRTSYKQELDKMESAIFPCVKRYFHEK
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADKILHRIKPGTTFYVYTDYESDYKGSYTYFIGEEVLLFDDQLSTEFQTLLIPMQQYAK
HHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHH
FTTAPAPMPDVIVNAWNYIWKMSASELGGERRYNVDFEIYDERATDRQNIVLDIYVGIKQ
HCCCCCCCHHHHHHHHHHHHCCCHHHCCCCEEECCCEEEECCCCCCCCCEEEEEEECCCC
LT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]