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The map label for this gene is cph2 [H]

Identifier: 45657015

GI number: 45657015

Start: 1395227

End: 1396186

Strand: Reverse

Name: cph2 [H]

Synonym: LIC11131

Alternate gene names: 45657015

Gene position: 1396186-1395227 (Counterclockwise)

Preceding gene: 304570489

Following gene: 45657014

Centisome position: 32.64

GC content: 37.6

Gene sequence:

>960_bases
TTGTATTCGAGGAATCGTATGAAATACGAAGAAATGAAATACGATATCGAAAAATTTTTTGATTATTCTTTAGATATGCT
TTGTATAGCAAGATTAGATGGATATATATTCAGAATCAATCCATCTTTCCAAAAAGCGTTTGGTTGGAAAAGTGAAGATC
TACTCGCCTTCGGTTCTTATACATTCCTACATCCAGATGACGTAGAACCAACTTATCAAGTTGTAGAAAAATTAAAAAAA
GGTACACCTATCGTATCTTTTCAAAATCGTTATCGTTGTACCAATGGAGAATACAAAAACTTTTCTTGGACGGCTTTTCC
CGATCTACGTTCTGAATTGATTTACGCTATCGCAAGAGATATTACCGAAATCGTGGAATCTAACCGTAAGCTCAACCAAC
TCGCAGCAGAACTCAAAGACGCAAATGATAAATTATTTGAACAGGCTAGTACAGACCCTCTCACAAAGTTAAAAAATAGG
AGAACATTTAACGAAGAATTAAAGGATCTAATCGTTCACACGAACAAAAAAAGAGGATTTTTATCTTTATTGATGATCGA
TGTAGACCATTTCAAAACATACAACGATCAATTTGGTCATCCGGCTGGAGATCAGGTTTTAATCCGCTTAGCTTCCGTTT
TGACTTATGCCCTACGAGTCAGTGATTTATTGGCTCGATTCGGTGGAGAAGAATTTGTAGTCGCATTACCCGAAACCGGA
GAATACAAAGCAATTGAAGTAGCTGATCGATTGGTAGTTACAATCCAAAAGGAAACTTGGGAAAACCGACCGATCACAAT
CAGCGTAGGAATTGCAACCTTAGACTTCAGCCTTCCAGTTTCTACTTTTCGTGATACAGATTTTTCCACAAGGATTGTAG
AAGAAGCTGACCGTGCTCTCTATCGTTCCAAAGCCAATGGTAGAAACCAAGCGACTCATTGTTCCCAGATTTTGCTGTGA

Upstream 100 bases:

>100_bases
GAATCACTCTTCATTCATACAAAAACTTTTTACAAAATATTTCAAATCGAATTCTTATGACTAAACAAAACCTCTTCTTT
AATTACCCTATTCATTTCTT

Downstream 100 bases:

>100_bases
TCCAAATTTTAAATAAACAAATTAGGCCCATTTTGAAGAGCTCCATTTTCAGGTTCAAAATGGCAAAACTGATTCGTTGT
AAAAGAAACTTTAATTTTAT

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MYSRNRMKYEEMKYDIEKFFDYSLDMLCIARLDGYIFRINPSFQKAFGWKSEDLLAFGSYTFLHPDDVEPTYQVVEKLKK
GTPIVSFQNRYRCTNGEYKNFSWTAFPDLRSELIYAIARDITEIVESNRKLNQLAAELKDANDKLFEQASTDPLTKLKNR
RTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYNDQFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETG
EYKAIEVADRLVVTIQKETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQATHCSQILL

Sequences:

>Translated_319_residues
MYSRNRMKYEEMKYDIEKFFDYSLDMLCIARLDGYIFRINPSFQKAFGWKSEDLLAFGSYTFLHPDDVEPTYQVVEKLKK
GTPIVSFQNRYRCTNGEYKNFSWTAFPDLRSELIYAIARDITEIVESNRKLNQLAAELKDANDKLFEQASTDPLTKLKNR
RTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYNDQFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETG
EYKAIEVADRLVVTIQKETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQATHCSQILL
>Mature_319_residues
MYSRNRMKYEEMKYDIEKFFDYSLDMLCIARLDGYIFRINPSFQKAFGWKSEDLLAFGSYTFLHPDDVEPTYQVVEKLKK
GTPIVSFQNRYRCTNGEYKNFSWTAFPDLRSELIYAIARDITEIVESNRKLNQLAAELKDANDKLFEQASTDPLTKLKNR
RTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYNDQFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETG
EYKAIEVADRLVVTIQKETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQATHCSQILL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=282, Percent_Identity=30.4964539007092, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=38.3233532934132, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87081881, Length=302, Percent_Identity=28.476821192053, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=34.2696629213483, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=34.1176470588235, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=33.1491712707182, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=33.7278106508876, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=34.9112426035503, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=30.4878048780488, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=30.1775147928994, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=104, Percent_Identity=39.4230769230769, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=28.4023668639053, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36916; Mature: 36916

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSRNRMKYEEMKYDIEKFFDYSLDMLCIARLDGYIFRINPSFQKAFGWKSEDLLAFGSY
CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEEECCCHHHHCCCCCCCEEEECCE
TFLHPDDVEPTYQVVEKLKKGTPIVSFQNRYRCTNGEYKNFSWTAFPDLRSELIYAIARD
EEECCCCCCHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCEEEECHHHHHHHHHHHHHH
ITEIVESNRKLNQLAAELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGF
HHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCE
LSLLMIDVDHFKTYNDQFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETG
EEHEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
EYKAIEVADRLVVTIQKETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRAL
CEEHHHHHCCEEEEEEHHCCCCCCEEEEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHH
YRSKANGRNQATHCSQILL
HHHCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MYSRNRMKYEEMKYDIEKFFDYSLDMLCIARLDGYIFRINPSFQKAFGWKSEDLLAFGSY
CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEEECCCHHHHCCCCCCCEEEECCE
TFLHPDDVEPTYQVVEKLKKGTPIVSFQNRYRCTNGEYKNFSWTAFPDLRSELIYAIARD
EEECCCCCCHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCEEEECHHHHHHHHHHHHHH
ITEIVESNRKLNQLAAELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGF
HHHHHHCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCE
LSLLMIDVDHFKTYNDQFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETG
EEHEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
EYKAIEVADRLVVTIQKETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRAL
CEEHHHHHCCEEEEEEHHCCCCCCEEEEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHH
YRSKANGRNQATHCSQILL
HHHCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]