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The map label for this gene is lin

Identifier: 45656529

GI number: 45656529

Start: 770554

End: 771321

Strand: Direct

Name: lin

Synonym: LIC10631

Alternate gene names: 45656529

Gene position: 770554-771321 (Clockwise)

Preceding gene: 45656523

Following gene: 45656530

Centisome position: 18.02

GC content: 39.97

Gene sequence:

>768_bases
GTGACCGAGATTTTAAAAATCCAGAACCTCAAAGCGGGAATTCAAACCGGAGATTCCGGGGAAATCAAAGAAATCGTAAA
AGGAGTCGATCTGACAATCCGACCCGGAGAAGTCCATGCTATTATGGGACCGAATGGTTCCGGAAAAAGTACACTTTCCA
ACGTAATCATGGGACATCCTAAATACCAAGTTTTGTCGGGGGATATTCTATTTGAAGGGAAATCCATTTTAAATCTTCCG
ACAGACGAAAGGGCCAGACTTGGAATTTTTCTTTGTTTTCAGTATCCGACTAGTATTCCGGGAGTTACGATTGGTAATTT
TTTAAAAACCATTGTAAAATCGGTAAGAGGAAAGGAACTACCCGTTAAAGAATTTAGAAAAGAGCTCAAAGAATCTATGG
CGGCCCTTGATATGCCAGAGTCGTTTATTGCGCGTTATGTGAACGATGGGTTTTCCGGAGGAGAAAAAAAAAGAAACGAA
ATATTGCAGATGAGTCTACTCAAACCGAAACTTTCGGTATTGGACGAAACTGATTCCGGACTTGATATAGACGCGCTTCG
AATTGTAAGTGAAGGAATCAATCGAAATAAAACTCCGGAACGCTCTATACTACTAATCACACACTATCAAAGAATGTTAA
ACTATATCACGCCCGATTTTGTTCACGTATTTGCAAAAGGAAAAATCTTAAAAACAGGAACAAGAGAACTCGCGCTCGAA
TTGGAAGAAAAAGGATATGACTGGATCCTTGCAGAATCGAAAGACTGA

Upstream 100 bases:

>100_bases
TTTTCTTGTCGAAAACTTTAAAAACTACAAATAGAAAACAAAACTTGTGTAGTTTGGAAAAGGATCGCAGTCTCGAATAT
TCGCAAAGAAAGGTGTTTCT

Downstream 100 bases:

>100_bases
AACAAAACTGTCTTTGGAAAATCAGTTTGAGAGATTTGTTTCTCAAAGTAAGGAACCTCAGGCACTGAAAGATTTTCGTA
AGAAGGTTTTTGCCAAATTT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: VEG296 [H]

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLP
TDERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNE
ILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALE
LEEKGYDWILAESKD

Sequences:

>Translated_255_residues
MTEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLP
TDERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNE
ILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALE
LEEKGYDWILAESKD
>Mature_254_residues
TEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPT
DERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEI
LQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALEL
EEKGYDWILAESKD

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=230, Percent_Identity=28.695652173913, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI148612844, Length=238, Percent_Identity=28.1512605042017, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI255708477, Length=238, Percent_Identity=28.1512605042017, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI42741659, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI9665248, Length=236, Percent_Identity=26.271186440678, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787972, Length=250, Percent_Identity=50.4, Blast_Score=255, Evalue=2e-69,
Organism=Escherichia coli, GI87081709, Length=211, Percent_Identity=27.9620853080569, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787500, Length=246, Percent_Identity=29.6747967479675, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786698, Length=213, Percent_Identity=28.6384976525822, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994883, Length=239, Percent_Identity=29.7071129707113, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787029, Length=166, Percent_Identity=31.3253012048193, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789672, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787792, Length=157, Percent_Identity=29.9363057324841, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081791, Length=182, Percent_Identity=29.1208791208791, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=26.1261261261261, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17541710, Length=234, Percent_Identity=29.0598290598291, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=220, Percent_Identity=28.1818181818182, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=214, Percent_Identity=29.9065420560748, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=220, Percent_Identity=27.7272727272727, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=220, Percent_Identity=27.7272727272727, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=224, Percent_Identity=27.6785714285714, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115532730, Length=204, Percent_Identity=30.8823529411765, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=217, Percent_Identity=27.1889400921659, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=239, Percent_Identity=27.1966527196653, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=223, Percent_Identity=26.9058295964126, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=28.2407407407407, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324727, Length=208, Percent_Identity=26.4423076923077, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19920532, Length=230, Percent_Identity=30, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580930, Length=230, Percent_Identity=30, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28390; Mature: 28259

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHP
CCCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCC
KYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKEL
CEEEEECCEEECCCCEECCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
PVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCC
LDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALE
CCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCEEEECCCHHHEEE
LEEKGYDWILAESKD
HHCCCCEEEEEECCC
>Mature Secondary Structure 
TEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHP
CCHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCC
KYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKEL
CEEEEECCEEECCCCEECCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
PVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCC
LDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALE
CCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCEEEECCCHHHEEE
LEEKGYDWILAESKD
HHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]