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The map label for this gene is degT [H]

Identifier: 45656505

GI number: 45656505

Start: 742538

End: 743662

Strand: Reverse

Name: degT [H]

Synonym: LIC10607

Alternate gene names: 45656505

Gene position: 743662-742538 (Counterclockwise)

Preceding gene: 45656506

Following gene: 45656504

Centisome position: 17.39

GC content: 40.18

Gene sequence:

>1125_bases
ATGGGCGTCCCATTTATAGACATTAAAAGATTTGAACCTGGTTTACTGGAAGAATGGATTGAAAAAGTAAAAGTTCTCAG
TAAAAACGCTAGTTTTATTGGCGGTGAAGAAGTTTCTATTTTAGAAAAGAACCTAACCTCCTACACTGAAACTAAGTTTT
CTATCGCTTGTGCAAACGGCACAGATGCCCTTCAACTCGCTTTACGTGCGTTAGGTGTTGGCAAAGGAGATTCAGTCATT
CTCCCAGATTCGACTTTTTGGGCTACCTTCGAATCCGTAGTAAACGTTGGAGCTGATCCTTATACAGTTGATACTGACCC
GAACGATCTTCAGATGGATTTTGTTGAATTTGAAAAAGCTCTGGATAAAATCAAACCCAAGGCGGCAATTATCGTCCATC
TCTACGGCTGGGGTTCGTCCCGTCTTGAAGATTTTCGTAAACTCTGTAAGTCAAAAGGAGTTCCTCTGTTGGAAGATGGG
GCTCAGTGTTTCGGTGTAAAATTTAAAGGTGCATCTATCTATAAGGAAGCTCTTATTTCTACTACTTCTTTTTATCCCGC
AAAGGTGTTAGGTGGTGCTGGAGACGGAGGAGCGGTTTTTACGAATGACGAAACTCTCGCCAATAAGGTAAAAATGCTCG
CCAATCACGGTAGAATTTCTCATTACGCCTACGGAGATGTAGGTTGGAATTCTAGACTGGATACACTACAGGCCGCATTT
CTAAACCTCAACCTAAAACATCTGGAAGTTAGAATTGCTTCTCGTCTTAAATCTGTTCAAAAATATTATGATATACTCCC
GAACCTAGGTATTCAAGTCATCCACCCTCCTAAGGATTACGAAGAAAACGGTTATTGTAACGTTACACTTTCCACTCCGG
AAGAACGCCCTATGATTCAGGAAGTTCTGAAAGAAAAAGAAATCGGTTTTGGTAATATTTATCCAGGTGCAATGAGTGAT
CAACCTGGTGCCAAACCTTATATCAAAGGAAAATTCGGAGAGAAACATATAACCGGTAGAATCTGTTCTTCCGTCCTCAA
TTATCCTTTATTTCCTTATATGAAGGAAGAAGAGTTGGAAGAAGTTTTTTCCGCAATTCGGGCATTCAATTCTAGGAAAA
AATAA

Upstream 100 bases:

>100_bases
AAAAACAGAAACTGTCTCTTTCTAAACAAAAGGGAAACAATCAAAAAAAGAAGTAGTATTTTAGAGTATTCTTAAATATA
AATTAACTCAGGAGAGCCAA

Downstream 100 bases:

>100_bases
AAACCCAAATCTGTCCCGAAAAACGTAAGCACCAAACTCGCTCGAACACCCATAGATGCGAGACGTGAATTGCCAGTTTT
ACCTTTTTGTTAAATTAAAA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MGVPFIDIKRFEPGLLEEWIEKVKVLSKNASFIGGEEVSILEKNLTSYTETKFSIACANGTDALQLALRALGVGKGDSVI
LPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFVEFEKALDKIKPKAAIIVHLYGWGSSRLEDFRKLCKSKGVPLLEDG
AQCFGVKFKGASIYKEALISTTSFYPAKVLGGAGDGGAVFTNDETLANKVKMLANHGRISHYAYGDVGWNSRLDTLQAAF
LNLNLKHLEVRIASRLKSVQKYYDILPNLGIQVIHPPKDYEENGYCNVTLSTPEERPMIQEVLKEKEIGFGNIYPGAMSD
QPGAKPYIKGKFGEKHITGRICSSVLNYPLFPYMKEEELEEVFSAIRAFNSRKK

Sequences:

>Translated_374_residues
MGVPFIDIKRFEPGLLEEWIEKVKVLSKNASFIGGEEVSILEKNLTSYTETKFSIACANGTDALQLALRALGVGKGDSVI
LPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFVEFEKALDKIKPKAAIIVHLYGWGSSRLEDFRKLCKSKGVPLLEDG
AQCFGVKFKGASIYKEALISTTSFYPAKVLGGAGDGGAVFTNDETLANKVKMLANHGRISHYAYGDVGWNSRLDTLQAAF
LNLNLKHLEVRIASRLKSVQKYYDILPNLGIQVIHPPKDYEENGYCNVTLSTPEERPMIQEVLKEKEIGFGNIYPGAMSD
QPGAKPYIKGKFGEKHITGRICSSVLNYPLFPYMKEEELEEVFSAIRAFNSRKK
>Mature_373_residues
GVPFIDIKRFEPGLLEEWIEKVKVLSKNASFIGGEEVSILEKNLTSYTETKFSIACANGTDALQLALRALGVGKGDSVIL
PDSTFWATFESVVNVGADPYTVDTDPNDLQMDFVEFEKALDKIKPKAAIIVHLYGWGSSRLEDFRKLCKSKGVPLLEDGA
QCFGVKFKGASIYKEALISTTSFYPAKVLGGAGDGGAVFTNDETLANKVKMLANHGRISHYAYGDVGWNSRLDTLQAAFL
NLNLKHLEVRIASRLKSVQKYYDILPNLGIQVIHPPKDYEENGYCNVTLSTPEERPMIQEVLKEKEIGFGNIYPGAMSDQ
PGAKPYIKGKFGEKHITGRICSSVLNYPLFPYMKEEELEEVFSAIRAFNSRKK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=379, Percent_Identity=26.1213720316623, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI2367285, Length=306, Percent_Identity=26.797385620915, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41488; Mature: 41357

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVPFIDIKRFEPGLLEEWIEKVKVLSKNASFIGGEEVSILEKNLTSYTETKFSIACANG
CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCC
TDALQLALRALGVGKGDSVILPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFVEFEKA
CHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHH
LDKIKPKAAIIVHLYGWGSSRLEDFRKLCKSKGVPLLEDGAQCFGVKFKGASIYKEALIS
HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCCCEEEEEECCHHHHHHHHHH
TTSFYPAKVLGGAGDGGAVFTNDETLANKVKMLANHGRISHYAYGDVGWNSRLDTLQAAF
HCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LNLNLKHLEVRIASRLKSVQKYYDILPNLGIQVIHPPKDYEENGYCNVTLSTPEERPMIQ
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHH
EVLKEKEIGFGNIYPGAMSDQPGAKPYIKGKFGEKHITGRICSSVLNYPLFPYMKEEELE
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
EVFSAIRAFNSRKK
HHHHHHHHHHCCCC
>Mature Secondary Structure 
GVPFIDIKRFEPGLLEEWIEKVKVLSKNASFIGGEEVSILEKNLTSYTETKFSIACANG
CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCC
TDALQLALRALGVGKGDSVILPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFVEFEKA
CHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHH
LDKIKPKAAIIVHLYGWGSSRLEDFRKLCKSKGVPLLEDGAQCFGVKFKGASIYKEALIS
HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCCCEEEEEECCHHHHHHHHHH
TTSFYPAKVLGGAGDGGAVFTNDETLANKVKMLANHGRISHYAYGDVGWNSRLDTLQAAF
HCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LNLNLKHLEVRIASRLKSVQKYYDILPNLGIQVIHPPKDYEENGYCNVTLSTPEERPMIQ
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHH
EVLKEKEIGFGNIYPGAMSDQPGAKPYIKGKFGEKHITGRICSSVLNYPLFPYMKEEELE
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
EVFSAIRAFNSRKK
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]