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The map label for this gene is 45656054

Identifier: 45656054

GI number: 45656054

Start: 173425

End: 173949

Strand: Direct

Name: 45656054

Synonym: LIC10144

Alternate gene names: NA

Gene position: 173425-173949 (Clockwise)

Preceding gene: 45656052

Following gene: 45656055

Centisome position: 4.05

GC content: 32.0

Gene sequence:

>525_bases
ATGGTTCAATCTGATTCTGTAGATTTTTCAGTTTTATACGAGGATAACTATCGAACCGTATATCATTTTCTTTTGAAAAT
TTGCGGTGATCCGGAAGTTGCCGAGGATTTGACTCAAGAGGCTTTCTTAAAGGCATTTACTTTTTTTCATAAATTCGATT
CTAAGATTGCTTCTTTCAGCACCTGGACTTGTTCGATTGCAAAAAATCTATACTTCAAACATTACAATAAACAGAAAAAA
GAATTCGGAAATATACGACTCAGTGATTTAGTCGGTGATATTGAGATAGACCCGGAAATTCCGGAAAATTTAGAGAAGGT
TTTTTTGGAAAAAGCAATAAAAGATACGATTGAAAGTCTTCCTGAACCAGAAAAGAGTATAATATTGTATAAAGAATTAA
AAAAGAAAACTTTAAAAGAAACAGCTCAAGTATTGGGAATTTCGGAAAGAACGGTAAGTAGGAGATTAATTTCTGCTATT
TCTTTACTGAGAACAAAATTAGAACAGCAAGGATTTCAATTCTAA

Upstream 100 bases:

>100_bases
GTTTTCAAAAAAAGATCGAGTTTTAATTTCTTTTTTGTGCTTTTAGAATCGTAATTTATTAAAAAAACTGCAAAAGACCG
AGTAATCGGTACTTATTTCA

Downstream 100 bases:

>100_bases
ACTTCTATTATGAAAACGGAATTAGACGATATAGAACGTTTTGAAGACCTTTTAGGAAGGTACTTATACGGTGAATTGAA
TGCCGAAGATAAGCGTGAAC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Subunit; ECF-Like Sigma Factor SigE; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor Y; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVQSDSVDFSVLYEDNYRTVYHFLLKICGDPEVAEDLTQEAFLKAFTFFHKFDSKIASFSTWTCSIAKNLYFKHYNKQKK
EFGNIRLSDLVGDIEIDPEIPENLEKVFLEKAIKDTIESLPEPEKSIILYKELKKKTLKETAQVLGISERTVSRRLISAI
SLLRTKLEQQGFQF

Sequences:

>Translated_174_residues
MVQSDSVDFSVLYEDNYRTVYHFLLKICGDPEVAEDLTQEAFLKAFTFFHKFDSKIASFSTWTCSIAKNLYFKHYNKQKK
EFGNIRLSDLVGDIEIDPEIPENLEKVFLEKAIKDTIESLPEPEKSIILYKELKKKTLKETAQVLGISERTVSRRLISAI
SLLRTKLEQQGFQF
>Mature_174_residues
MVQSDSVDFSVLYEDNYRTVYHFLLKICGDPEVAEDLTQEAFLKAFTFFHKFDSKIASFSTWTCSIAKNLYFKHYNKQKK
EFGNIRLSDLVGDIEIDPEIPENLEKVFLEKAIKDTIESLPEPEKSIILYKELKKKTLKETAQVLGISERTVSRRLISAI
SLLRTKLEQQGFQF

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20227; Mature: 20227

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQSDSVDFSVLYEDNYRTVYHFLLKICGDPEVAEDLTQEAFLKAFTFFHKFDSKIASFS
CCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TWTCSIAKNLYFKHYNKQKKEFGNIRLSDLVGDIEIDPEIPENLEKVFLEKAIKDTIESL
HHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PEPEKSIILYKELKKKTLKETAQVLGISERTVSRRLISAISLLRTKLEQQGFQF
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVQSDSVDFSVLYEDNYRTVYHFLLKICGDPEVAEDLTQEAFLKAFTFFHKFDSKIASFS
CCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TWTCSIAKNLYFKHYNKQKKEFGNIRLSDLVGDIEIDPEIPENLEKVFLEKAIKDTIESL
HHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
PEPEKSIILYKELKKKTLKETAQVLGISERTVSRRLISAISLLRTKLEQQGFQF
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA