Click here to switch to the map view.

The map label for this gene is nfo

Identifier: 45359241

GI number: 45359241

Start: 1619774

End: 1620595

Strand: Direct

Name: nfo

Synonym: MMP1678

Alternate gene names: NA

Gene position: 1619774-1620595 (Clockwise)

Preceding gene: 45359239

Following gene: 45359243

Centisome position: 97.51

GC content: 28.71

Gene sequence:

>822_bases
ATGTTGAAATTTGGAACCGCTGGAATACCGATAAATGCTAAAAATACAGAAAGCGCACTCGAATATTTAAAAGAAATTAA
GCTTGATGCAATGGAGCTTGAATTCGTTCGTGGTGTAAATTTAAAAGCTGAAAAAGCAGAATCTTTAGCAAAAAACTTGA
AAATTACACTCAGTGCCCATGCTCCCTATTATATCAATTTAAATGCAAAGGAACCTGAAAAAATCGAATCAAGTATTAAA
AGAATCGTTGATTCTGCAAAAATCATCAGTATATTTAATAAAAAAAATTCTGAAAATAAAAACGTGGTTTTTCATTCTGG
ATTTTATTTAAAGCAGGATAAAGATTTAGTTTATGAGAAAATAAAAGTAAATATTCAAAAAATACTAAAAATAATGGATG
AAAATAAAATAAATGCGATTCTAAGGCCTGAAACTACTGGAAAAATATCGCAATTTGGAAGTATTGATGAATTAATCCAG
CTGTCAACTGAAATTGACATAATGCCTTGCATTGACTTTTCACACGTATACGCACGAAGTCTTGGAAAAATAAATGATTA
TGATTCGTTTTCAAATATATTATCAAAACTTGAAAATAATCTTGGGAAAAAAGGAATCAAAGATATGCACATCCACATTT
CTGGAATTGATTTTGGAAACGGGGGAGAAAAAAAGCATTTTCCAATTTTAAATTCTGAATTTAATTATATGGCAGTTTTA
AAAGCTTTAAAAGATTTTGAATGTTCTGGAACTGTTATTTGCGAAAGCCCCAAATTAGAATACGATGCAGTTATTTTAAA
AAAGAATTATGAAGAGTTATAA

Upstream 100 bases:

>100_bases
TAACTCAAAATATGCTTTTATATCCATGTCTTCACCTACATCAAAATATATAGCTACAAACTTAGATAAATAGGTTGATA
CTCTTAACTCATGTGATAAA

Downstream 100 bases:

>100_bases
TCATTACTGCTGAACTGGAACTATTGAAATTTTTTTAAGAGAATTTCCTTTTTTACAGTCTACTTTTTCAGGAAGTATTG
ATGCTACCTTGTATTTTCCA

Product: endonuclease IV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLKFGTAGIPINAKNTESALEYLKEIKLDAMELEFVRGVNLKAEKAESLAKNLKITLSAHAPYYINLNAKEPEKIESSIK
RIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYEKIKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQ
LSTEIDIMPCIDFSHVYARSLGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGNGGEKKHFPILNSEFNYMAVL
KALKDFECSGTVICESPKLEYDAVILKKNYEEL

Sequences:

>Translated_273_residues
MLKFGTAGIPINAKNTESALEYLKEIKLDAMELEFVRGVNLKAEKAESLAKNLKITLSAHAPYYINLNAKEPEKIESSIK
RIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYEKIKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQ
LSTEIDIMPCIDFSHVYARSLGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGNGGEKKHFPILNSEFNYMAVL
KALKDFECSGTVICESPKLEYDAVILKKNYEEL
>Mature_273_residues
MLKFGTAGIPINAKNTESALEYLKEIKLDAMELEFVRGVNLKAEKAESLAKNLKITLSAHAPYYINLNAKEPEKIESSIK
RIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYEKIKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQ
LSTEIDIMPCIDFSHVYARSLGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGNGGEKKHFPILNSEFNYMAVL
KALKDFECSGTVICESPKLEYDAVILKKNYEEL

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 30871; Mature: 30871

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFGTAGIPINAKNTESALEYLKEIKLDAMELEFVRGVNLKAEKAESLAKNLKITLSAH
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCEEEEEEEC
APYYINLNAKEPEKIESSIKRIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYEK
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCHHHHHHH
IKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQLSTEIDIMPCIDFSHVYARS
HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCHHHHHHHHCCCEEEECCCHHHHHHHH
LGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGNGGEKKHFPILNSEFNYMAVL
HCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
KALKDFECSGTVICESPKLEYDAVILKKNYEEL
HHHHCCCCCCEEEECCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLKFGTAGIPINAKNTESALEYLKEIKLDAMELEFVRGVNLKAEKAESLAKNLKITLSAH
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCEEEEEEEC
APYYINLNAKEPEKIESSIKRIVDSAKIISIFNKKNSENKNVVFHSGFYLKQDKDLVYEK
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCHHHHHHH
IKVNIQKILKIMDENKINAILRPETTGKISQFGSIDELIQLSTEIDIMPCIDFSHVYARS
HHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCHHHHHHHHCCCEEEECCCHHHHHHHH
LGKINDYDSFSNILSKLENNLGKKGIKDMHIHISGIDFGNGGEKKHFPILNSEFNYMAVL
HCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
KALKDFECSGTVICESPKLEYDAVILKKNYEEL
HHHHCCCCCCEEEECCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]