| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523253
Identifier: 42523253
GI number: 42523253
Start: 1697877
End: 1699250
Strand: Direct
Name: 42523253
Synonym: Bd1762
Alternate gene names: NA
Gene position: 1697877-1699250 (Clockwise)
Preceding gene: 42523251
Following gene: 42523255
Centisome position: 44.88
GC content: 51.09
Gene sequence:
>1374_bases ATGACTGACACGCGGGCGCAGACCTTATTCAGGCAAAAATTGGAACTTCTAATCCTGTCCGAGGATGAGGCGATCTTAAA CCGCGCCAGGGAAGTCATTTCCCGCCACTATCTGACCTTCAAACAAATGCCTTACTCTGAACTGGATTCAAGTTCGCGCT CGGAGCTGATGCGTGCGCAGATGGTTTTGATGGTGCAGGAGGAGAGTGAGGATCTGTCCGCATTTGCGGCGCGTGTGGAT CAGGTCTTGAATCTGTTCCCGCGATCCCGGATTGTGACGGTCATGGCGGCCTCGTTGTCGCGCGAGAATCTGGAAGGAAC CCAGAATCCGCGTGTCACACCACTTTCGCAAAGTGAATTCAACCGCACCTTGAAGTTTGAGTATATCTGCCTGTATCGTT GTCGGGCGCAGTACTTTGAGATTCAGATCGGTGATTTGTTCCCAATGACCACCATGGCCTTCCCGGTGTTTGTGCGCATG CCTCTGAATCAGCGTTATCTTGCGGTTGTGTATAGCAACTCAGTTCTGAGTGATGAGCGCTTCCAGCGGGTGGGAAAAGC TGAAAGCACCTTTATTCAAAATCGCGACAGTGAAAAGTATCTGGATTACATCACGACTTATTACGACACCTCCGGGCGCG GTCTGAGAAAACGCGCGCGTGCGCTGTTTTTGTCCCTGTGTCATGGGGCTTTGCACTTGAATGAAATTCTGCTTTTTGAT TTTAAATCCCCGGGGCCTGAGGCTTTCCGCGCCCGTTATGAGGCGCTTCAGAAAACGGCAACAGATCTGCTGCATCTTTT GGGAACCGAAGAGGATCTGTGGGATCTTTTCCGTGAGGTCTTAAAGGGCGAGTTCTACGAATTGTGGCGCGCCCCTTGGA TTGCTGTTTACGGCGCCATGATTGCGAAGAAAAGCGGTCAGGGGGATCCTCTGACTGTGTTAATGGCGGGCCTGCTGACG GACGTGGGGCTGTTTGATATTGACGATCAGATCAGCCGTGAGTTTTTAACTTCCGAAAGCAGGACTGTTTTGGAAGAGCA GCAGCGTGAATTCAACAATCATCCGATTCTGTCCTTGAACCGCAGCCTGATCAAAGGGCTTCCGTTGTCAGAAGAAATCA AGGCTGTGATGGTTTGCACGCATGAGCGCTTTGATGAAAAGGGCTTCCCGAATCAGGTCCCGGCGGACAAGATTCCGGTG GAGGCTTATATTCTGCAGTTTGCGGAAAAGATTGATCAGGGTGTGCTGACGACGATGAAAAAGAATGGTGTGGGGTTTCG CTTCTTGAAGGAAAAAATCTGGGAGGCTGAAAACAACGCTGGCACAACATTTTCGCCAGCGTTCCTCGCAGCCATTGCCG AGTCTTTGCTTTAA
Upstream 100 bases:
>100_bases CTCGTATTGGTCCAGATAGGATTGGTTGAGGGGGATTAATTGTCAACCCGGAAAAGTTTTGTTGGCAGCTCCTGTGCGGA AGTTTAGAATTTTGAAAGCA
Downstream 100 bases:
>100_bases GGGCAGATCTCGATCATTCCACCCAGCTCCATGTTGGCGTAGATCTCTTCAATTTCATAATTACGAACGGCCATGCATCC CTTGGTCCAATCCCGCGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MTDTRAQTLFRQKLELLILSEDEAILNRAREVISRHYLTFKQMPYSELDSSSRSELMRAQMVLMVQEESEDLSAFAARVD QVLNLFPRSRIVTVMAASLSRENLEGTQNPRVTPLSQSEFNRTLKFEYICLYRCRAQYFEIQIGDLFPMTTMAFPVFVRM PLNQRYLAVVYSNSVLSDERFQRVGKAESTFIQNRDSEKYLDYITTYYDTSGRGLRKRARALFLSLCHGALHLNEILLFD FKSPGPEAFRARYEALQKTATDLLHLLGTEEDLWDLFREVLKGEFYELWRAPWIAVYGAMIAKKSGQGDPLTVLMAGLLT DVGLFDIDDQISREFLTSESRTVLEEQQREFNNHPILSLNRSLIKGLPLSEEIKAVMVCTHERFDEKGFPNQVPADKIPV EAYILQFAEKIDQGVLTTMKKNGVGFRFLKEKIWEAENNAGTTFSPAFLAAIAESLL
Sequences:
>Translated_457_residues MTDTRAQTLFRQKLELLILSEDEAILNRAREVISRHYLTFKQMPYSELDSSSRSELMRAQMVLMVQEESEDLSAFAARVD QVLNLFPRSRIVTVMAASLSRENLEGTQNPRVTPLSQSEFNRTLKFEYICLYRCRAQYFEIQIGDLFPMTTMAFPVFVRM PLNQRYLAVVYSNSVLSDERFQRVGKAESTFIQNRDSEKYLDYITTYYDTSGRGLRKRARALFLSLCHGALHLNEILLFD FKSPGPEAFRARYEALQKTATDLLHLLGTEEDLWDLFREVLKGEFYELWRAPWIAVYGAMIAKKSGQGDPLTVLMAGLLT DVGLFDIDDQISREFLTSESRTVLEEQQREFNNHPILSLNRSLIKGLPLSEEIKAVMVCTHERFDEKGFPNQVPADKIPV EAYILQFAEKIDQGVLTTMKKNGVGFRFLKEKIWEAENNAGTTFSPAFLAAIAESLL >Mature_456_residues TDTRAQTLFRQKLELLILSEDEAILNRAREVISRHYLTFKQMPYSELDSSSRSELMRAQMVLMVQEESEDLSAFAARVDQ VLNLFPRSRIVTVMAASLSRENLEGTQNPRVTPLSQSEFNRTLKFEYICLYRCRAQYFEIQIGDLFPMTTMAFPVFVRMP LNQRYLAVVYSNSVLSDERFQRVGKAESTFIQNRDSEKYLDYITTYYDTSGRGLRKRARALFLSLCHGALHLNEILLFDF KSPGPEAFRARYEALQKTATDLLHLLGTEEDLWDLFREVLKGEFYELWRAPWIAVYGAMIAKKSGQGDPLTVLMAGLLTD VGLFDIDDQISREFLTSESRTVLEEQQREFNNHPILSLNRSLIKGLPLSEEIKAVMVCTHERFDEKGFPNQVPADKIPVE AYILQFAEKIDQGVLTTMKKNGVGFRFLKEKIWEAENNAGTTFSPAFLAAIAESLL
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52499; Mature: 52368
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTRAQTLFRQKLELLILSEDEAILNRAREVISRHYLTFKQMPYSELDSSSRSELMRAQ CCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHH MVLMVQEESEDLSAFAARVDQVLNLFPRSRIVTVMAASLSRENLEGTQNPRVTPLSQSEF HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH NRTLKFEYICLYRCRAQYFEIQIGDLFPMTTMAFPVFVRMPLNQRYLAVVYSNSVLSDER CCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHEECCCCCCEEEEEECCCCCCHHH FQRVGKAESTFIQNRDSEKYLDYITTYYDTSGRGLRKRARALFLSLCHGALHLNEILLFD HHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE FKSPGPEAFRARYEALQKTATDLLHLLGTEEDLWDLFREVLKGEFYELWRAPWIAVYGAM CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IAKKSGQGDPLTVLMAGLLTDVGLFDIDDQISREFLTSESRTVLEEQQREFNNHPILSLN HHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEC RSLIKGLPLSEEIKAVMVCTHERFDEKGFPNQVPADKIPVEAYILQFAEKIDQGVLTTMK HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH KNGVGFRFLKEKIWEAENNAGTTFSPAFLAAIAESLL HCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TDTRAQTLFRQKLELLILSEDEAILNRAREVISRHYLTFKQMPYSELDSSSRSELMRAQ CCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHH MVLMVQEESEDLSAFAARVDQVLNLFPRSRIVTVMAASLSRENLEGTQNPRVTPLSQSEF HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH NRTLKFEYICLYRCRAQYFEIQIGDLFPMTTMAFPVFVRMPLNQRYLAVVYSNSVLSDER CCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHEECCCCCCEEEEEECCCCCCHHH FQRVGKAESTFIQNRDSEKYLDYITTYYDTSGRGLRKRARALFLSLCHGALHLNEILLFD HHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE FKSPGPEAFRARYEALQKTATDLLHLLGTEEDLWDLFREVLKGEFYELWRAPWIAVYGAM CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IAKKSGQGDPLTVLMAGLLTDVGLFDIDDQISREFLTSESRTVLEEQQREFNNHPILSLN HHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEC RSLIKGLPLSEEIKAVMVCTHERFDEKGFPNQVPADKIPVEAYILQFAEKIDQGVLTTMK HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH KNGVGFRFLKEKIWEAENNAGTTFSPAFLAAIAESLL HCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA