Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42523184

Identifier: 42523184

GI number: 42523184

Start: 1623480

End: 1624298

Strand: Direct

Name: 42523184

Synonym: Bd1687

Alternate gene names: NA

Gene position: 1623480-1624298 (Clockwise)

Preceding gene: 42523183

Following gene: 42523185

Centisome position: 42.92

GC content: 36.14

Gene sequence:

>819_bases
ATGAATGATAATTGGGGTAAAATAAGTTCCAAAAAATGGATAATAATTGTCGTTTCTTTTTCTGTTGCGCTAGTGGGGTA
CGTCTTTGCATTCAGGTATCTGTCTGAAAATGAAACCGAGAGGGTTAGTTTCGCTATCCGATCGGCGGTAGAGGATGAGC
GAGATATTATTCTTTTGAATTCTTTTGATATTAAGTTTTTGTCTTCTTCTGCTTCGATAATGTCTGGTGAAATGTTGCGC
AGGCAGGTCGGGGAGGTAGTTGGTAACACCGATGAAATGAAACTCCTAAGAGTTGCATTGGCAAATAAGGGTTTGGTTGA
TGTGCGCGGATATTATGATCCTTATAAAAGAAGATACAACTTATTTGTCACTCGTTCGAAGGATTCTCAACGTCAAATAG
GAGATGAGATCTTTTTGTTGTTAGAGAAACGAGTGAACGTTTTGTTTCAAGATAGGGCCAATATTGAAATTGATACAAAA
CTTGCGAAATTACGTGCTCAAGAGAAGAGGTTAGAGAGGGAGAACGTTATTTTGGATGAGTTGGCACGATTTAATAGTAA
TCAGCGAGAGCGGCTGGATATTAAAAAGAATATTTTACTTATAAGGTCTGAAATTAAAGAACTTCTTGAATTTAAGGATA
GGACGCTGAGTATTCCAATTTTTGATAAAGTTGAATATGTCGGTGGCGTTATAGATTATTATAGGAAAAGTTTTATTTTC
TTCTTGTTGTGTTTTTTTGCCTCCTCAGTGATTTGCATAATTTATGTATGTATTCCCATGTCAGAGTTACGTTTGAAGCC
TTCAAATATTAAGAGCTAA

Upstream 100 bases:

>100_bases
TAGCACTTGGTAAGGCGAAGTAGGTGGACGAGGCATTAGTATCCTTTTTTTTGAGTGGCAGTCTCAACGGATTCGCATAT
TTTATTGAAAGGCAGCTTTT

Downstream 100 bases:

>100_bases
TGGCATGAGTTCCATATCAATTAGATCTTTAGGAATTAGCTCTTTGACATATCTTTTTTCTGGCGTATTAAGCGCAGTTG
TGCCGTTTCTTGCGCTCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR
RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK
LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF
FLLCFFASSVICIIYVCIPMSELRLKPSNIKS

Sequences:

>Translated_272_residues
MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR
RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK
LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF
FLLCFFASSVICIIYVCIPMSELRLKPSNIKS
>Mature_272_residues
MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLNSFDIKFLSSSASIMSGEMLR
RQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYNLFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTK
LAKLRAQEKRLERENVILDELARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF
FLLCFFASSVICIIYVCIPMSELRLKPSNIKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31759; Mature: 31759

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLN
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
SFDIKFLSSSASIMSGEMLRRQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYN
CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHCEEE
LFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTKLAKLRAQEKRLERENVILDE
EEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH
FLLCFFASSVICIIYVCIPMSELRLKPSNIKS
HHHHHHHHHHHHHHHHHCCHHHHEECCCCCCC
>Mature Secondary Structure
MNDNWGKISSKKWIIIVVSFSVALVGYVFAFRYLSENETERVSFAIRSAVEDERDIILLN
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
SFDIKFLSSSASIMSGEMLRRQVGEVVGNTDEMKLLRVALANKGLVDVRGYYDPYKRRYN
CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHCEEE
LFVTRSKDSQRQIGDEIFLLLEKRVNVLFQDRANIEIDTKLAKLRAQEKRLERENVILDE
EEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LARFNSNQRERLDIKKNILLIRSEIKELLEFKDRTLSIPIFDKVEYVGGVIDYYRKSFIF
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH
FLLCFFASSVICIIYVCIPMSELRLKPSNIKS
HHHHHHHHHHHHHHHHHCCHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA