| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523091
Identifier: 42523091
GI number: 42523091
Start: 1516284
End: 1517519
Strand: Direct
Name: 42523091
Synonym: Bd1586
Alternate gene names: NA
Gene position: 1516284-1517519 (Clockwise)
Preceding gene: 42523076
Following gene: 42523097
Centisome position: 40.08
GC content: 47.49
Gene sequence:
>1236_bases ATGCGTTCTTTTGGCGTTTTTGTGTTGGTCTGTCTGGTTTCGCTTAATTCACATGCTTTGTTTGGGATTGGGAAGAAGAA GAAAGCTACTCCTGTTTCAGAGTATTCAAAAGGACATACGATTAAAACAACTGACGGGTGCAGCTTGAATTTGTCAGATC TTTATATCAACCCTAAAAACAAACATTCTTGGAGCGGAGCCTGCCCTGGCGGTTATGCGGAGGGGATTGGCTGGGTATCT GTTCAAGCGAATGGAATTTCATATAAAGCCTTTGCAGTTCAAATGCAGCGTGGATGGGTTCTGCCGGGGAGCTACTGGTA TATTTCCGGTCAAACAGATTTCTACCAAAGCACACTTGGGGCTCATGATTGTAAAGATAGAAAGAGCAATATGCAGCAAT GTGCTCGGATTGAGTCGTTCGTGGCTGCGAACCCTCCTTATGAGCAAATTCTGACTTCTGATGGGTGTAAACTTCAGCAA CCTAGCTTGCTGGTCCATGGATCGCAGGTGACCTGGAGTGGGAAGTGTGAGAATGGCTTGGCCGAAGGGTATGGATATGT AAGGCACCCTTCTAGGGATGGGAACAATGTCATTATTGGAAAATCAGCCTATTTGTTGCGTTATCATCAAGGCAAGAGAG TTGTCGGCAGTTACTATCAGTGGGACTCTGAGCTCAATGGATCCAAAAACTCGTTCATCTTCAAGATTGATCACGTTCTA ACTCCTATGCATATTGAAACATTAAAGCCCTGCGCGTCCATCAAGCCTTGTAAAGAGTTGATGGCGGCGAAGGCTTTGGG TGGGAAGAATCCTGAAGGAATGGCTCCGGTGTCGGACTTCATGCCTCCCGTTACTAATACTCGTGGGGGTGGGGATCGTC CTCCGACATTTGATCCCAATCCTCGTCCGAATCCGGGTGTTCCGGCGCAGCCTCCGGTGAATGGTGGGAATGGTTCTTCT GCTGGTGGCGGATATGGTAGCGGCAAGTACAAAGCTCCGAAAGTGGCTTGTGATGACTATGCTTTGGGTCTAGAAATGGA CAAACACTCTGCAACTATTAATGAGGGCGTTGGGATCTGTGACAATGCCAAGGCGACGGCAAAACTTTATGAGTTCTATG CCAACTTGCTAGAGGCGAGTTGCCCGTACAAAACTGCTGAAGTGGCACAGGTGCGTGAGGCTGTCGAATCTGCCAAACAA ACAATTCGTGGCAGTTGCACAGACTATAATTACTAA
Upstream 100 bases:
>100_bases TAGACGGTCCTTGGAAATTTTGCTGGTTTCTTCGATGTAATCATACAGAAACGTATTTAGTGATAGAAACGCGGATCAAA TTCAATTTTTTGAGGTTTTC
Downstream 100 bases:
>100_bases TTAAGAAAATCTTAGGTTCTAAAAACTAAAAACCCCGGTACATCGCCGGGGTTTCTTTTTTTATCTTTCGTTCCAGTACA CAACTCGTGGGGGGCCTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MRSFGVFVLVCLVSLNSHALFGIGKKKKATPVSEYSKGHTIKTTDGCSLNLSDLYINPKNKHSWSGACPGGYAEGIGWVS VQANGISYKAFAVQMQRGWVLPGSYWYISGQTDFYQSTLGAHDCKDRKSNMQQCARIESFVAANPPYEQILTSDGCKLQQ PSLLVHGSQVTWSGKCENGLAEGYGYVRHPSRDGNNVIIGKSAYLLRYHQGKRVVGSYYQWDSELNGSKNSFIFKIDHVL TPMHIETLKPCASIKPCKELMAAKALGGKNPEGMAPVSDFMPPVTNTRGGGDRPPTFDPNPRPNPGVPAQPPVNGGNGSS AGGGYGSGKYKAPKVACDDYALGLEMDKHSATINEGVGICDNAKATAKLYEFYANLLEASCPYKTAEVAQVREAVESAKQ TIRGSCTDYNY
Sequences:
>Translated_411_residues MRSFGVFVLVCLVSLNSHALFGIGKKKKATPVSEYSKGHTIKTTDGCSLNLSDLYINPKNKHSWSGACPGGYAEGIGWVS VQANGISYKAFAVQMQRGWVLPGSYWYISGQTDFYQSTLGAHDCKDRKSNMQQCARIESFVAANPPYEQILTSDGCKLQQ PSLLVHGSQVTWSGKCENGLAEGYGYVRHPSRDGNNVIIGKSAYLLRYHQGKRVVGSYYQWDSELNGSKNSFIFKIDHVL TPMHIETLKPCASIKPCKELMAAKALGGKNPEGMAPVSDFMPPVTNTRGGGDRPPTFDPNPRPNPGVPAQPPVNGGNGSS AGGGYGSGKYKAPKVACDDYALGLEMDKHSATINEGVGICDNAKATAKLYEFYANLLEASCPYKTAEVAQVREAVESAKQ TIRGSCTDYNY >Mature_411_residues MRSFGVFVLVCLVSLNSHALFGIGKKKKATPVSEYSKGHTIKTTDGCSLNLSDLYINPKNKHSWSGACPGGYAEGIGWVS VQANGISYKAFAVQMQRGWVLPGSYWYISGQTDFYQSTLGAHDCKDRKSNMQQCARIESFVAANPPYEQILTSDGCKLQQ PSLLVHGSQVTWSGKCENGLAEGYGYVRHPSRDGNNVIIGKSAYLLRYHQGKRVVGSYYQWDSELNGSKNSFIFKIDHVL TPMHIETLKPCASIKPCKELMAAKALGGKNPEGMAPVSDFMPPVTNTRGGGDRPPTFDPNPRPNPGVPAQPPVNGGNGSS AGGGYGSGKYKAPKVACDDYALGLEMDKHSATINEGVGICDNAKATAKLYEFYANLLEASCPYKTAEVAQVREAVESAKQ TIRGSCTDYNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44443; Mature: 44443
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS00092 N6_MTASE ; PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSFGVFVLVCLVSLNSHALFGIGKKKKATPVSEYSKGHTIKTTDGCSLNLSDLYINPKN CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCEEEECCCCEEEEHEEEECCCC KHSWSGACPGGYAEGIGWVSVQANGISYKAFAVQMQRGWVLPGSYWYISGQTDFYQSTLG CCCCCCCCCCCHHCCCEEEEEEECCEEEEEEEEEEECCEECCCCEEEECCCCHHHHHHCC AHDCKDRKSNMQQCARIESFVAANPPYEQILTSDGCKLQQPSLLVHGSQVTWSGKCENGL CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCH AEGYGYVRHPSRDGNNVIIGKSAYLLRYHQGKRVVGSYYQWDSELNGSKNSFIFKIDHVL HHCCCEEECCCCCCCEEEEECCEEEEEEECCCCEECHHHHCCCCCCCCCCCEEEEECCCC TPMHIETLKPCASIKPCKELMAAKALGGKNPEGMAPVSDFMPPVTNTRGGGDRPPTFDPN CCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC PRPNPGVPAQPPVNGGNGSSAGGGYGSGKYKAPKVACDDYALGLEMDKHSATINEGVGIC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECEEECCCCCHHHCCCCCC DNAKATAKLYEFYANLLEASCPYKTAEVAQVREAVESAKQTIRGSCTDYNY CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRSFGVFVLVCLVSLNSHALFGIGKKKKATPVSEYSKGHTIKTTDGCSLNLSDLYINPKN CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCEEEECCCCEEEEHEEEECCCC KHSWSGACPGGYAEGIGWVSVQANGISYKAFAVQMQRGWVLPGSYWYISGQTDFYQSTLG CCCCCCCCCCCHHCCCEEEEEEECCEEEEEEEEEEECCEECCCCEEEECCCCHHHHHHCC AHDCKDRKSNMQQCARIESFVAANPPYEQILTSDGCKLQQPSLLVHGSQVTWSGKCENGL CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCH AEGYGYVRHPSRDGNNVIIGKSAYLLRYHQGKRVVGSYYQWDSELNGSKNSFIFKIDHVL HHCCCEEECCCCCCCEEEEECCEEEEEEECCCCEECHHHHCCCCCCCCCCCEEEEECCCC TPMHIETLKPCASIKPCKELMAAKALGGKNPEGMAPVSDFMPPVTNTRGGGDRPPTFDPN CCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC PRPNPGVPAQPPVNGGNGSSAGGGYGSGKYKAPKVACDDYALGLEMDKHSATINEGVGIC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECEEECCCCCHHHCCCCCC DNAKATAKLYEFYANLLEASCPYKTAEVAQVREAVESAKQTIRGSCTDYNY CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA