| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522707
Identifier: 42522707
GI number: 42522707
Start: 1107745
End: 1109313
Strand: Direct
Name: 42522707
Synonym: Bd1167
Alternate gene names: NA
Gene position: 1107745-1109313 (Clockwise)
Preceding gene: 42522705
Following gene: 42522708
Centisome position: 29.28
GC content: 49.27
Gene sequence:
>1569_bases ATGTCGTTTAATTATCAAAAAAACAAAGAACATTCGAGCGACAGTTTTTGGACGTCGTATTCGGATTTATTCTTGGGTTT AAGCACGATCTTCCTTCTTTTGTATGTCACATCCAGTTTGCGCACAGGCACCGATGCTTTGCGTGGCCAGGTGGAAAACC AGAAGCTTTCCATGAAGGTGGAAGAACTGGAAAACCAGTTGAAGATGTACGAGAACGTGAAGAACGAATATCTGGCCAGT CAGGCACCTAAAGACGAGGTGCAGGAGTATGAAGAGCTTATGGACAAGCTGACATTGCTTCAGGAGGACGCCAAAACTGA AAAAGAGCGTCTGATCCAGGAAGCCCGTGAAAACGGGGAAAAGGTCAAAGCTCTGAACAAGTACCAGCAGATGGTGCGCA ATGTTCTTAATGCCAACAAGATGGCCAAGTCCAAGCTGATCAATCGTGATGATTTGATTAAAGAGCAGGACGTGGAAATC GAAACCCAGGAAACCGAAATTGCTGATCTGAATAAAGACATTCAGAACAAAAAGCAGTTGATCGCCCAGGGTGAACAGAA GATCGCGGTCACACAGGCTCAGTTGCAAAAACGTCTGACCGAGCTGCGTGTGGCCTACAAGAACAACAAGCTGTCCAAAC AGTTGTTTGAACAGAAAATGGCGCAAGCCCGCGCTGAGGGAAATCAAAAGGTGGCCCAGCTGAATCAGGTCAATGCCCAA TATCAAATGCAACTGAACCAGGCCAATGTGCAATTGGGTCAGGTGCAGGGCGAACTTTCCAAAACTCAGGGGTTGCTGGC GCAGAAGGAAGACGAAGCAACTCATCTGGCGGGCGCGTTGTCCCGCACCAAGGCTGAGGCCGGTGCGAAAATCGCAGGAT TGCAACAGGGCTTTGCGGAAGAAAAAGCGGCTTTGGCGGCAGGCTTTGGCAAGGAAAAGGCAAAGTTGCAGGGTGCTTTG AGCGACACGCAAGGGCAGTTGGCGAAAGCACGTGCTGAAATTGAAGCGCGTAAATCCGTGGCGGGTGAGATTCAAAAAGG TTTCGCCAAGGCAGGGATCAAAGCTGACATTGATATGCAGACGGGCGACGTGGTTCTGGATTTCGGACAGGCTTACTTTG ACAGTGACTCCGACCGCCTGAAACACGAGATGAAAGGTGTCCTTGAAAAAGCGATGCCGATTTATTCGCGCTCTTTGTTC GGCAACCCAAAGGTGTCGGATAAAATTTCCGCGGTGGAGATCATCGGTTTTGCGTCACCAACATATCAGGGCCGTTTCGT CGATCCGCACAGTTCCAAGCCGGCGGACAAAGCCGCTTTGAAGTACAACATGGATCTAAGCTATCGCCGTGCGAATTCCA TCTTCAGTTACATGCTGGATGAAGGAAACATGAGATTTGAACATCAACGCGAACTATTGGCCCTTATGAAGGTTTCCGGA CGAAGCTTCCTGGAAGTCATGAAGGTGCAAAATCGCAACGTCGCCACAGCAGCCGAATTCTGCAAGCAGAACGACTGTAA GAAGGCGCAGCGGGTAATCATCCGCTTTAACATGGATCCGAAGAAATAA
Upstream 100 bases:
>100_bases CTTCGGCATTTTCTCCGAAAGAAAAACACTCAATTCTGTTTTTGAGCCACCGAAAAGAAGATCGTCACTGTTATGATTTG TGCAGGTGGGGTGCGTTGGT
Downstream 100 bases:
>100_bases AAGGGGTGGGTTGTGACAACGAAGGCATTTGCTGAATATTTTATTATAAGTCTGCCGTATGTGATGGGCGCCGTCTTTCT GGTCGGTTTGTTCTTCCGCG
Product: microtubule binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MSFNYQKNKEHSSDSFWTSYSDLFLGLSTIFLLLYVTSSLRTGTDALRGQVENQKLSMKVEELENQLKMYENVKNEYLAS QAPKDEVQEYEELMDKLTLLQEDAKTEKERLIQEARENGEKVKALNKYQQMVRNVLNANKMAKSKLINRDDLIKEQDVEI ETQETEIADLNKDIQNKKQLIAQGEQKIAVTQAQLQKRLTELRVAYKNNKLSKQLFEQKMAQARAEGNQKVAQLNQVNAQ YQMQLNQANVQLGQVQGELSKTQGLLAQKEDEATHLAGALSRTKAEAGAKIAGLQQGFAEEKAALAAGFGKEKAKLQGAL SDTQGQLAKARAEIEARKSVAGEIQKGFAKAGIKADIDMQTGDVVLDFGQAYFDSDSDRLKHEMKGVLEKAMPIYSRSLF GNPKVSDKISAVEIIGFASPTYQGRFVDPHSSKPADKAALKYNMDLSYRRANSIFSYMLDEGNMRFEHQRELLALMKVSG RSFLEVMKVQNRNVATAAEFCKQNDCKKAQRVIIRFNMDPKK
Sequences:
>Translated_522_residues MSFNYQKNKEHSSDSFWTSYSDLFLGLSTIFLLLYVTSSLRTGTDALRGQVENQKLSMKVEELENQLKMYENVKNEYLAS QAPKDEVQEYEELMDKLTLLQEDAKTEKERLIQEARENGEKVKALNKYQQMVRNVLNANKMAKSKLINRDDLIKEQDVEI ETQETEIADLNKDIQNKKQLIAQGEQKIAVTQAQLQKRLTELRVAYKNNKLSKQLFEQKMAQARAEGNQKVAQLNQVNAQ YQMQLNQANVQLGQVQGELSKTQGLLAQKEDEATHLAGALSRTKAEAGAKIAGLQQGFAEEKAALAAGFGKEKAKLQGAL SDTQGQLAKARAEIEARKSVAGEIQKGFAKAGIKADIDMQTGDVVLDFGQAYFDSDSDRLKHEMKGVLEKAMPIYSRSLF GNPKVSDKISAVEIIGFASPTYQGRFVDPHSSKPADKAALKYNMDLSYRRANSIFSYMLDEGNMRFEHQRELLALMKVSG RSFLEVMKVQNRNVATAAEFCKQNDCKKAQRVIIRFNMDPKK >Mature_521_residues SFNYQKNKEHSSDSFWTSYSDLFLGLSTIFLLLYVTSSLRTGTDALRGQVENQKLSMKVEELENQLKMYENVKNEYLASQ APKDEVQEYEELMDKLTLLQEDAKTEKERLIQEARENGEKVKALNKYQQMVRNVLNANKMAKSKLINRDDLIKEQDVEIE TQETEIADLNKDIQNKKQLIAQGEQKIAVTQAQLQKRLTELRVAYKNNKLSKQLFEQKMAQARAEGNQKVAQLNQVNAQY QMQLNQANVQLGQVQGELSKTQGLLAQKEDEATHLAGALSRTKAEAGAKIAGLQQGFAEEKAALAAGFGKEKAKLQGALS DTQGQLAKARAEIEARKSVAGEIQKGFAKAGIKADIDMQTGDVVLDFGQAYFDSDSDRLKHEMKGVLEKAMPIYSRSLFG NPKVSDKISAVEIIGFASPTYQGRFVDPHSSKPADKAALKYNMDLSYRRANSIFSYMLDEGNMRFEHQRELLALMKVSGR SFLEVMKVQNRNVATAAEFCKQNDCKKAQRVIIRFNMDPKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58829; Mature: 58698
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFNYQKNKEHSSDSFWTSYSDLFLGLSTIFLLLYVTSSLRTGTDALRGQVENQKLSMKV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHH EELENQLKMYENVKNEYLASQAPKDEVQEYEELMDKLTLLQEDAKTEKERLIQEARENGE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH KVKALNKYQQMVRNVLNANKMAKSKLINRDDLIKEQDVEIETQETEIADLNKDIQNKKQL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHH IAQGEQKIAVTQAQLQKRLTELRVAYKNNKLSKQLFEQKMAQARAEGNQKVAQLNQVNAQ HHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH YQMQLNQANVQLGQVQGELSKTQGLLAQKEDEATHLAGALSRTKAEAGAKIAGLQQGFAE HHEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH EKAALAAGFGKEKAKLQGALSDTQGQLAKARAEIEARKSVAGEIQKGFAKAGIKADIDMQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC TGDVVLDFGQAYFDSDSDRLKHEMKGVLEKAMPIYSRSLFGNPKVSDKISAVEIIGFASP CCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCC TYQGRFVDPHSSKPADKAALKYNMDLSYRRANSIFSYMLDEGNMRFEHQRELLALMKVSG CCCCCEECCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC RSFLEVMKVQNRNVATAAEFCKQNDCKKAQRVIIRFNMDPKK HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHEEEEEECCCCCC >Mature Secondary Structure SFNYQKNKEHSSDSFWTSYSDLFLGLSTIFLLLYVTSSLRTGTDALRGQVENQKLSMKV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHH EELENQLKMYENVKNEYLASQAPKDEVQEYEELMDKLTLLQEDAKTEKERLIQEARENGE HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH KVKALNKYQQMVRNVLNANKMAKSKLINRDDLIKEQDVEIETQETEIADLNKDIQNKKQL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHH IAQGEQKIAVTQAQLQKRLTELRVAYKNNKLSKQLFEQKMAQARAEGNQKVAQLNQVNAQ HHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH YQMQLNQANVQLGQVQGELSKTQGLLAQKEDEATHLAGALSRTKAEAGAKIAGLQQGFAE HHEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH EKAALAAGFGKEKAKLQGALSDTQGQLAKARAEIEARKSVAGEIQKGFAKAGIKADIDMQ HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC TGDVVLDFGQAYFDSDSDRLKHEMKGVLEKAMPIYSRSLFGNPKVSDKISAVEIIGFASP CCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCC TYQGRFVDPHSSKPADKAALKYNMDLSYRRANSIFSYMLDEGNMRFEHQRELLALMKVSG CCCCCEECCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC RSFLEVMKVQNRNVATAAEFCKQNDCKKAQRVIIRFNMDPKK HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA