| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is strB [H]
Identifier: 42521930
GI number: 42521930
Start: 296463
End: 297362
Strand: Direct
Name: strB [H]
Synonym: Bd0307
Alternate gene names: 42521930
Gene position: 296463-297362 (Clockwise)
Preceding gene: 42521928
Following gene: 42521931
Centisome position: 7.84
GC content: 53.33
Gene sequence:
>900_bases ATGAATTTTCCCGCACCGTTCGTGAAAAACATCCGCGACACTTTTGGCATGGCCGGTGAGGAGTGGCTGCAAGGTCTTCC GTCATTGCTGCGAGGTCTTTGTCTGCGCTGGGATCTGACGATCACCGGTCGCGCTGAAGATCTGTCTTATAACTTTGTGG GATATGCACGCACCAATGCGGATAAAAAACCTGTGGTCCTCAAAGTACTTTGCCCGGATGGGATTTTGGATAAAGAACTG CTATGGCTGAAGTCTTATCCCGAAGTCACCCCCGCGGTTTTGGCGGTGGAGGCCGAGCAGCGGGCTTTTATGATGCAGAT GGTTTTGCCGGGGAATTCTTTAAAGTCACTGGTGAAACAAGGCAAGGACGCTGAGGCCACGGCGGTGATTGCGCAAATGA TCCGGGCTTTGGGAAAAGAGCGTCCTGCAGGAGTGCTCCCTTATAAGCATGTGCGTGACTTCTTGCCGACACTGTCGCTG CTGCATGGGAAACTTCCTTCCGAACTGGTGCTGCTGGTGGCGGTTCTTTATGACGAGCTCTGCATGACGGCTCCGCGGGA CGTGCTTTTGCACGGCGATCTTCACCATGACAATATCCTGGCTTCGGGGGATGGGTGGAAGATCATTGATCCTCACGGAT ACTTGGGCGACCCGGCCTTTGAAGTCGGGGCAATGATTTCAAACCCTCTGGACTGTTATCCATCGGGACCAGCACTGGAA AAAATTCTGGAGCAGAGACTGAACATCCTTTACGGTGAGCTTGCCATGGATCCTTATCGGATTCTGGGCTGGGCGTTTTG TTATTCCATGCTTTCTGCAGCCTGGAGCGTGGAGGACCGGCAGGAGGTCCCGGAGAACCTCTTGCAAATCGTGCGGATTT TAGCCAGCAAACTGACATGA
Upstream 100 bases:
>100_bases CGCGTTCCTGTCTTAAGTCAAAAGCCCCTCCGCCAATCTGGATCAAGGTCCAAAAGGTACCTGCTTACTTTTTCCGAAGC GCTGTGCCAGAGTCAATAGT
Downstream 100 bases:
>100_bases TTGAGAGATGCTGTTGCAGGACCACTGACAGAAAACAGCCGGACAAAGCGCATTCTTCTTTCTAGAATAAAAAAAGGGGG GGCGTTTATGTTGAATGAAA
Product: streptomycin resistance protein
Products: NA
Alternate protein names: Streptomycin 3''-phosphotransferase; SPH [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MNFPAPFVKNIRDTFGMAGEEWLQGLPSLLRGLCLRWDLTITGRAEDLSYNFVGYARTNADKKPVVLKVLCPDGILDKEL LWLKSYPEVTPAVLAVEAEQRAFMMQMVLPGNSLKSLVKQGKDAEATAVIAQMIRALGKERPAGVLPYKHVRDFLPTLSL LHGKLPSELVLLVAVLYDELCMTAPRDVLLHGDLHHDNILASGDGWKIIDPHGYLGDPAFEVGAMISNPLDCYPSGPALE KILEQRLNILYGELAMDPYRILGWAFCYSMLSAAWSVEDRQEVPENLLQIVRILASKLT
Sequences:
>Translated_299_residues MNFPAPFVKNIRDTFGMAGEEWLQGLPSLLRGLCLRWDLTITGRAEDLSYNFVGYARTNADKKPVVLKVLCPDGILDKEL LWLKSYPEVTPAVLAVEAEQRAFMMQMVLPGNSLKSLVKQGKDAEATAVIAQMIRALGKERPAGVLPYKHVRDFLPTLSL LHGKLPSELVLLVAVLYDELCMTAPRDVLLHGDLHHDNILASGDGWKIIDPHGYLGDPAFEVGAMISNPLDCYPSGPALE KILEQRLNILYGELAMDPYRILGWAFCYSMLSAAWSVEDRQEVPENLLQIVRILASKLT >Mature_299_residues MNFPAPFVKNIRDTFGMAGEEWLQGLPSLLRGLCLRWDLTITGRAEDLSYNFVGYARTNADKKPVVLKVLCPDGILDKEL LWLKSYPEVTPAVLAVEAEQRAFMMQMVLPGNSLKSLVKQGKDAEATAVIAQMIRALGKERPAGVLPYKHVRDFLPTLSL LHGKLPSELVLLVAVLYDELCMTAPRDVLLHGDLHHDNILASGDGWKIIDPHGYLGDPAFEVGAMISNPLDCYPSGPALE KILEQRLNILYGELAMDPYRILGWAFCYSMLSAAWSVEDRQEVPENLLQIVRILASKLT
Specific function: The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation [H]
COG id: COG3570
COG function: function code V; Streptomycin 6-kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aminoglycoside phosphotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006748 [H]
Pfam domain/function: PF04655 APH_6_hur [H]
EC number: =2.7.1.87 [H]
Molecular weight: Translated: 33254; Mature: 33254
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFPAPFVKNIRDTFGMAGEEWLQGLPSLLRGLCLRWDLTITGRAEDLSYNFVGYARTNA CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEECCC DKKPVVLKVLCPDGILDKELLWLKSYPEVTPAVLAVEAEQRAFMMQMVLPGNSLKSLVKQ CCCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHEEEEHHHHHHHHHHHCCCHHHHHHHHC GKDAEATAVIAQMIRALGKERPAGVLPYKHVRDFLPTLSLLHGKLPSELVLLVAVLYDEL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH CMTAPRDVLLHGDLHHDNILASGDGWKIIDPHGYLGDPAFEVGAMISNPLDCYPSGPALE HHCCCCCEEEECCCCCCCEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHH KILEQRLNILYGELAMDPYRILGWAFCYSMLSAAWSVEDRQEVPENLLQIVRILASKLT HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNFPAPFVKNIRDTFGMAGEEWLQGLPSLLRGLCLRWDLTITGRAEDLSYNFVGYARTNA CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEEECCC DKKPVVLKVLCPDGILDKELLWLKSYPEVTPAVLAVEAEQRAFMMQMVLPGNSLKSLVKQ CCCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHEEEEHHHHHHHHHHHCCCHHHHHHHHC GKDAEATAVIAQMIRALGKERPAGVLPYKHVRDFLPTLSLLHGKLPSELVLLVAVLYDEL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH CMTAPRDVLLHGDLHHDNILASGDGWKIIDPHGYLGDPAFEVGAMISNPLDCYPSGPALE HHCCCCCEEEECCCCCCCEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHH KILEQRLNILYGELAMDPYRILGWAFCYSMLSAAWSVEDRQEVPENLLQIVRILASKLT HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3889831 [H]