| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42521931
Identifier: 42521931
GI number: 42521931
Start: 297450
End: 298064
Strand: Direct
Name: 42521931
Synonym: Bd0308
Alternate gene names: NA
Gene position: 297450-298064 (Clockwise)
Preceding gene: 42521930
Following gene: 42521934
Centisome position: 7.86
GC content: 51.06
Gene sequence:
>615_bases ATGTTGAATGAAAATCCTCTGGGCGAAATTCAAAAAATTGAAAACGATATTTATCGGTTGCAGCGTCGACTGGAAGCCTT AAGAAAAGAAAACCCTCCGCTGGAAGTCAAAAACTACATCTTCAAAAATCTGAACGGGGAAGTCACTTTGCGCGATCTTT TTGATGGCAAGGACCGACTGCTGGCCATTCATAATATGGGACAGGGATGTCGCTCCTGCACACTGTGGGCGGATGGCTAC AATGCTTTTTTGCCTGCGCTGGAAGAACAGTTCACTGTTGTGCTTTTTTCAAAAGACGCCCCGGAAGTGCAGCGTCGTTT TGCCAATGACCGTGGCTGGCGTTTTAATATGGTGTCTCATGGGGGCGGTCTTTATATCCGTGAACAAAGTGTGGTGCCGG GCAGGAACAATATGCCGGGACTGGTGTACTACGAACGGCGCGGAGAGCGGATCTTCAAAAAAAACAGCAGCGTGGTGGGA CCTGGGGATACCTTTTGCCCGGTGTGGAGTCTGCTCAGTCTGGCCGGCATCGGCATGGATGAGTGGACGCCCCAGTACCG TTACTGGAGCCGCCCGGAAAGACTGGACGACGGCGGTATGAATCTGAGTCTTTAG
Upstream 100 bases:
>100_bases CAAACTGACATGATTGAGAGATGCTGTTGCAGGACCACTGACAGAAAACAGCCGGACAAAGCGCATTCTTCTTTCTAGAA TAAAAAAAGGGGGGGCGTTT
Downstream 100 bases:
>100_bases CCGAATTTCCCGGCTTGATAGTCTTCAATGGCCTCGATGATTTCTGCTTTGGTGTTCATCACAAACGGTCCGTGTGAAAT CACGGGCTCATTGAAAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 204; Mature: 204
Protein sequence:
>204_residues MLNENPLGEIQKIENDIYRLQRRLEALRKENPPLEVKNYIFKNLNGEVTLRDLFDGKDRLLAIHNMGQGCRSCTLWADGY NAFLPALEEQFTVVLFSKDAPEVQRRFANDRGWRFNMVSHGGGLYIREQSVVPGRNNMPGLVYYERRGERIFKKNSSVVG PGDTFCPVWSLLSLAGIGMDEWTPQYRYWSRPERLDDGGMNLSL
Sequences:
>Translated_204_residues MLNENPLGEIQKIENDIYRLQRRLEALRKENPPLEVKNYIFKNLNGEVTLRDLFDGKDRLLAIHNMGQGCRSCTLWADGY NAFLPALEEQFTVVLFSKDAPEVQRRFANDRGWRFNMVSHGGGLYIREQSVVPGRNNMPGLVYYERRGERIFKKNSSVVG PGDTFCPVWSLLSLAGIGMDEWTPQYRYWSRPERLDDGGMNLSL >Mature_204_residues MLNENPLGEIQKIENDIYRLQRRLEALRKENPPLEVKNYIFKNLNGEVTLRDLFDGKDRLLAIHNMGQGCRSCTLWADGY NAFLPALEEQFTVVLFSKDAPEVQRRFANDRGWRFNMVSHGGGLYIREQSVVPGRNNMPGLVYYERRGERIFKKNSSVVG PGDTFCPVWSLLSLAGIGMDEWTPQYRYWSRPERLDDGGMNLSL
Specific function: Unknown
COG id: COG4312
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23549; Mature: 23549
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNENPLGEIQKIENDIYRLQRRLEALRKENPPLEVKNYIFKNLNGEVTLRDLFDGKDRL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCEE LAIHNMGQGCRSCTLWADGYNAFLPALEEQFTVVLFSKDAPEVQRRFANDRGWRFNMVSH EEEECCCCCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEC GGGLYIREQSVVPGRNNMPGLVYYERRGERIFKKNSSVVGPGDTFCPVWSLLSLAGIGMD CCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC EWTPQYRYWSRPERLDDGGMNLSL CCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLNENPLGEIQKIENDIYRLQRRLEALRKENPPLEVKNYIFKNLNGEVTLRDLFDGKDRL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCEE LAIHNMGQGCRSCTLWADGYNAFLPALEEQFTVVLFSKDAPEVQRRFANDRGWRFNMVSH EEEECCCCCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEC GGGLYIREQSVVPGRNNMPGLVYYERRGERIFKKNSSVVGPGDTFCPVWSLLSLAGIGMD CCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC EWTPQYRYWSRPERLDDGGMNLSL CCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA