Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

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The map label for this gene is 42521887

Identifier: 42521887

GI number: 42521887

Start: 251519

End: 252796

Strand: Direct

Name: 42521887

Synonym: Bd0263

Alternate gene names: NA

Gene position: 251519-252796 (Clockwise)

Preceding gene: 42521886

Following gene: 42521889

Centisome position: 6.65

GC content: 50.94

Gene sequence:

>1278_bases
ATGGCAGGAACCACAATAATCACCAAGTCTCTTTTGTTGGCAGCACTTTTGATTCTGGCGGCATGTGCACCAGCCAATGA
TTTCCCGGCGATTGATGAAACCGGCAACGAAAGCGCCTCGATTGTTCCACCGACTCCTGAAGTGGAGTCCCCGGAAGAAG
AAGCGGGCGGCAATACCGGTGCAGGCGGTGGTTCAGCGGTCGCCAGTCAGAAGTTGTTGCTAAATCAGGCCATGACTCTG
CGCTATGAAAAATCCGGTATCCTTGAAAATAAGGTCGAACTTCCCCCGGGAACCCAGATCGAAGTTCCGTCCAATTACGA
AGTCAAACATCTGGATTACCGCACCTCCAGCGGAGCCATTGAAAGATCCAGCACCGGATTTCTGTATCCGGTGAAGATCG
TTTCTGTCACTGATGCGTTCAAAACGCAGTTCCCGCAAAGCAAGATTGATGAAATCAACAAAACCTCGGGTGGACTGTTT
GTTTTTGCTTCCATCGTTGGAAACCTGGAAGGAACCGAAGGCAACTTTGCAGTGGTTCAAGCGGCCTCTCCGGGGGAAGG
CTTTCTGAAGTATTATCAGCCCAGCGGAAAGCCGAAGTTCAACTATGTCACTTCTGTGACCAAACGGTTTGGTGCGAAAC
TAAATCAGGGTGTAAAGCCTGAATCAATGTCAGCGGCTCAGCGTGAAAAGTACCAGAGCATCTTTGCAGAATTGCAGAAA
GCGGTAAACCGTGAAGTGGCCACGCCCAAGTCTTATTTGATGATCGATAAAAAGGTCGCGACCCAAAGATCCATCGACTT
TGAAAAAACCGGAGCGATCACAACCACCGGGGCCTGGAGCATTGCGACTCAAGGCACGGCGGTTCGCCACGGGTTTGCGA
ATGTTCCTTGTGCAGAATTTCAGTCGGAACTTTTGCGTCAGGCTTATCAGCGCGCAGGCTATCGTGTGACGGATGACTTT
AACAAAACCAAAGGCAATCAGCTGATCTGGTCCAGCACTGCGGCGGTCGTGAACTATTCCATGGCCCTTTACAAGGCGGG
CTGGATCGCCTGGGATTCCACAAAGTATCGCCCGATTTTGGGTGCGATCATGATGAATGGCGCAGGTTATACTCCGGGGC
ATACTTATATTTCCGGCAGCAATGACGGTTTGATCATCGTGGATAACGGCGCCCCTCAGGGCCGGGATTTAAGAAAAACG
ACAGATAAAACGATTTCCATCATGTTCCAAGTGGGTGTGTTCTTCCTTCCTCCGGGAATCAACCCGCCCGCTTGGTAA

Upstream 100 bases:

>100_bases
TCTGCACTTGCAGTCAATCTGGTGAAAAAAGTTTTTACACCTCCAAAAACATTAAATTCCTAATGTGAGTCGGCCGAAGA
CCTCTGTGAACGGAGGTCCC

Downstream 100 bases:

>100_bases
GCGTCAGCACATTTCCCAGCAGACACAGAACCACACCCAGGATGATATAAGGCGTCCAGTGGAAGTTCTCAAAGAAACTG
GAAAGTGTCAGAGCAATCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTL
RYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLF
VFASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK
AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDF
NKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKT
TDKTISIMFQVGVFFLPPGINPPAW

Sequences:

>Translated_425_residues
MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTL
RYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLF
VFASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK
AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDF
NKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKT
TDKTISIMFQVGVFFLPPGINPPAW
>Mature_424_residues
AGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTGAGGGSAVASQKLLLNQAMTLR
YEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAIERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFV
FASIVGNLEGTEGNFAVVQAASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQKA
VNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEFQSELLRQAYQRAGYRVTDDFN
KTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPILGAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTT
DKTISIMFQVGVFFLPPGINPPAW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45744; Mature: 45613

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCC
AGGGSAVASQKLLLNQAMTLRYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAI
CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC
ERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFVFASIVGNLEGTEGNFAVVQ
CCCCCCEEEEEEEEEEHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCEEEEE
AASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK
ECCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEF
HHHHHHCCCHHHEEEEHHHHHHHCCCCHHCCCEEECCCEEEECCCCHHHCCCCCCCHHHH
QSELLRQAYQRAGYRVTDDFNKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPIL
HHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHH
GAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTTDKTISIMFQVGVFFLPPGI
HHHEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEEECEEEECCCC
NPPAW
CCCCC
>Mature Secondary Structure 
AGTTIITKSLLLAALLILAACAPANDFPAIDETGNESASIVPPTPEVESPEEEAGGNTG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHCCCCCC
AGGGSAVASQKLLLNQAMTLRYEKSGILENKVELPPGTQIEVPSNYEVKHLDYRTSSGAI
CCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC
ERSSTGFLYPVKIVSVTDAFKTQFPQSKIDEINKTSGGLFVFASIVGNLEGTEGNFAVVQ
CCCCCCEEEEEEEEEEHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHCCCCCCCCCEEEEE
AASPGEGFLKYYQPSGKPKFNYVTSVTKRFGAKLNQGVKPESMSAAQREKYQSIFAELQK
ECCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AVNREVATPKSYLMIDKKVATQRSIDFEKTGAITTTGAWSIATQGTAVRHGFANVPCAEF
HHHHHHCCCHHHEEEEHHHHHHHCCCCHHCCCEEECCCEEEECCCCHHHCCCCCCCHHHH
QSELLRQAYQRAGYRVTDDFNKTKGNQLIWSSTAAVVNYSMALYKAGWIAWDSTKYRPIL
HHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHH
GAIMMNGAGYTPGHTYISGSNDGLIIVDNGAPQGRDLRKTTDKTISIMFQVGVFFLPPGI
HHHEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHEEEEEECEEEECCCC
NPPAW
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA