Click here to switch to the map view.

The map label for this gene is ycfQ [C]

Identifier: 41410025

GI number: 41410025

Start: 4386763

End: 4387359

Strand: Direct

Name: ycfQ [C]

Synonym: MAP3927

Alternate gene names: 41410025

Gene position: 4386763-4387359 (Clockwise)

Preceding gene: 41410023

Following gene: 41410029

Centisome position: 90.83

GC content: 75.88

Gene sequence:

>597_bases
ATGGCGCCTCCGCGGAAGCATGAAACCGATGTGATCCTCGACGCCGCCCGGGCTCTGGTGCTCGACGGCGGGCCGCGCGC
GGCCAGCGTGGCCGCGATCGCGAAAGCCAGTGGCGCGCCGGCGGGCACGCTGTATCACCGGTTCGGCAACCGCGACGGCA
TCCTGACCGCGGCGTGGCTGCGGGCGCTGGAACGCTTCCAGGCCCGGGCGCTGGCCGCCGACGGCGACACCCCGGAGGAC
ACCGCGGTGGCGATGGCCGTGGCCGCGGTCGGCTTCGCCCGCGCCCTGCCCGACGACGCCCGGCTGCTGCTGACGATCCG
CCCGGGCGACCTGCTCGACGGCGAGCCCGACGCGGCGTTCCGGCAGACGCTGGCCGCGATGAACGCCCCGCTGACCCAGC
GGCTGGCGCAGTTGGCCCGGCACCTGTACGGGAACGCCCGGCCGCGATCGGTCGACGCCGTCGCCCGCGCCGTCGCCGAC
CTGCCGTATGCCGTGGTGCGCCGTCACGCGCACGACGACCCGATGCCGTCCTGGCTGGAAACCGACGTGGCCGCGTCGGC
CCGGGCCGTGCTACGGAGCTTCGGCGAACGCCCGTAG

Upstream 100 bases:

>100_bases
GCAGCAGCGCCGCCCACGTGTCGTCGCGGTTGGCCTCGATGGTTATGGCATGCTCATCGATATAGGGCAATCGTTCCATA
TAGAAGGAATGTACTAGATC

Downstream 100 bases:

>100_bases
CGACGCGACCTGCGCGGGATCCAAAGAGGGACGGACGTTTTCGCGAGCCGCGGCGAGGTCGGCGGCCGTCACGTCGGTGG
CGTCGATGGACCGGCGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAPPRKHETDVILDAARALVLDGGPRAASVAAIAKASGAPAGTLYHRFGNRDGILTAAWLRALERFQARALAADGDTPED
TAVAMAVAAVGFARALPDDARLLLTIRPGDLLDGEPDAAFRQTLAAMNAPLTQRLAQLARHLYGNARPRSVDAVARAVAD
LPYAVVRRHAHDDPMPSWLETDVAASARAVLRSFGERP

Sequences:

>Translated_198_residues
MAPPRKHETDVILDAARALVLDGGPRAASVAAIAKASGAPAGTLYHRFGNRDGILTAAWLRALERFQARALAADGDTPED
TAVAMAVAAVGFARALPDDARLLLTIRPGDLLDGEPDAAFRQTLAAMNAPLTQRLAQLARHLYGNARPRSVDAVARAVAD
LPYAVVRRHAHDDPMPSWLETDVAASARAVLRSFGERP
>Mature_197_residues
APPRKHETDVILDAARALVLDGGPRAASVAAIAKASGAPAGTLYHRFGNRDGILTAAWLRALERFQARALAADGDTPEDT
AVAMAVAAVGFARALPDDARLLLTIRPGDLLDGEPDAAFRQTLAAMNAPLTQRLAQLARHLYGNARPRSVDAVARAVADL
PYAVVRRHAHDDPMPSWLETDVAASARAVLRSFGERP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21011; Mature: 20880

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPRKHETDVILDAARALVLDGGPRAASVAAIAKASGAPAGTLYHRFGNRDGILTAAWL
CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
RALERFQARALAADGDTPEDTAVAMAVAAVGFARALPDDARLLLTIRPGDLLDGEPDAAF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHH
RQTLAAMNAPLTQRLAQLARHLYGNARPRSVDAVARAVADLPYAVVRRHAHDDPMPSWLE
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHH
TDVAASARAVLRSFGERP
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APPRKHETDVILDAARALVLDGGPRAASVAAIAKASGAPAGTLYHRFGNRDGILTAAWL
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
RALERFQARALAADGDTPEDTAVAMAVAAVGFARALPDDARLLLTIRPGDLLDGEPDAAF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHH
RQTLAAMNAPLTQRLAQLARHLYGNARPRSVDAVARAVADLPYAVVRRHAHDDPMPSWLE
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHH
TDVAASARAVLRSFGERP
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA