| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is fadD7
Identifier: 41409622
GI number: 41409622
Start: 3925355
End: 3926944
Strand: Direct
Name: fadD7
Synonym: MAP3524
Alternate gene names: 41409622
Gene position: 3925355-3926944 (Clockwise)
Preceding gene: 41409620
Following gene: 41409625
Centisome position: 81.27
GC content: 74.21
Gene sequence:
>1590_bases GTGGCGATGACGTCCGAGGCGACACCGAGCGCGACGGCCGCCGGACCGCGGTTGGCCGACCTGGTCGAGGCGGCCGCGCA GCGGGCGCCGCGGGCGCCGGCGCTGCTGGTCGCCTCCGAGCGCAACCCGATCGCGTACGCGGATCTGGTCCGGCTCGTCG ATGACCTGGCCGCCCGGCTGCGGGCCGCCGGTTTGGGGCCGGGCGACCGGGTCGGGCTGCGCGCCGGCAGCAACCCCGAA TTCGTGGTCGCGCTGCTGGCCGCGTCGCGGGCGGATCTCGTTGTGGCGCCGCTGGATCCGGCCCTGCCCGCCGCCGACCA GCTGTCCCGCAGCCGGGCGGTGGGCGCTCGGGCGGTGCTCGTCGACCGGCTCGGCGAGGGCCAGACGGCACCCGAGAGCG CCCCCTGCTGGCCGGTCACCGTCACAGTCGGACCCGACGACGGCGCCCCGACGGTCGACCTGACCGTCACCGCGGCGCCC ACACACGACGTGACCGCGCCGCAGGGCCTGCGCGACGACGACGCCATGATCATGTTCACCGGGGGAACCACCGGGGCACC GAAAATGGTGCCCTGGACCCGGCACAACATCGCCGCCTCGATCCGGTCCATCGTCGCCGGATACGGGCTGGGGCCGCGGG ATGCGACGGTGGCGGTGATGCCGCTCTACCACGGGCACGGTCTGCTGGCCGCGCTGCTGGCCACCCTGGCATCCGGGGGA GCGGTGTTGTTGCCCGCGCGCGGAAAGTTCTCGGCGCACACCTTCTGGGACGACATCGCCGCCGTCGGCGCCACCTGGTA CACGGCCGTCCCGACCATCCATCAGATCCTGCTGGAGCGTGCCCGCACCGAAGCGCCGCGCGGCACCCACGCGCTGCGGT TCATCCGCAGCTGCAGCGCGCCGCTGACCGCCGAGACCGCGCAGGCGCTGCAGGACACCTTCGGTGCGCCCGTGGTGTGC GCCTTCGGGATGACCGAGGCCACCCACCAGGTGTCCACCACCGCCATCGATGGCGCCGGGCACAGCGAAAACCCCGGCGC CACACCGGGTCTCGTCGGCCGGTCGACCGGCCCGGACATCCGGATCGCCGGGCCGGACGGGCAATCGCTGCCCGCGGACA CCGTCGGCGAGGTCTGGCTGCGCGGCGCCACCGTGGTGCGCGGCTACCTCGGCGATCCGGCGATCACCGCCGCCAACTTC ACCGACGGGTGGCTGCACACCGGCGACCTTGGCACCCTGTCGGCCGCCGGCGACCTGGTCATCCGCGGCCGGATCAAGGA ACTGATCAACCGAGGCGGGGAGAAGATCTCGCCGGAACGGGTCGAGGGTGTGCTGGCCGGCCACCCCGACGTGCTGGAGG CGGCCGTGTTCGGCCGGCCGGACCAGCTGTACGGCGAAACCGTGGCAGCGGTGATCGTCACCCGCGGCTCGGCGGCGCCG ACGGCCGACGAACTGGCGTCGTTCTGCCGGGAACGGCTGGCGCCCTTCGAGGTGCCGGCCGAGTTCCGGCGGGCCGCCGA GCTGCCGCACACCGCGAAGGGCTCGCTGGACCGCCGCGCGGTGGCCGAACAATTCGGCGAAAGCGCTTGA
Upstream 100 bases:
>100_bases GGCGTCGATAGTTGGAGCTTATCGATCGTGAGCGGATCGGTATTGGACGCAGCGCAACGGCGCCCGGCATGGTGGCAGCG ACGGCACAACGGGAAAGGAT
Downstream 100 bases:
>100_bases CCGGCAGTGTGATTCGGGTCAGACCGCGGCGGTCGCCACTCGGGCGGCCGCGGATTCCGGCATCGGCTCGTAGCGGGCGA ACGACCGGGTGAACGAGGCC
Product: acyl-CoA synthetase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MAMTSEATPSATAAGPRLADLVEAAAQRAPRAPALLVASERNPIAYADLVRLVDDLAARLRAAGLGPGDRVGLRAGSNPE FVVALLAASRADLVVAPLDPALPAADQLSRSRAVGARAVLVDRLGEGQTAPESAPCWPVTVTVGPDDGAPTVDLTVTAAP THDVTAPQGLRDDDAMIMFTGGTTGAPKMVPWTRHNIAASIRSIVAGYGLGPRDATVAVMPLYHGHGLLAALLATLASGG AVLLPARGKFSAHTFWDDIAAVGATWYTAVPTIHQILLERARTEAPRGTHALRFIRSCSAPLTAETAQALQDTFGAPVVC AFGMTEATHQVSTTAIDGAGHSENPGATPGLVGRSTGPDIRIAGPDGQSLPADTVGEVWLRGATVVRGYLGDPAITAANF TDGWLHTGDLGTLSAAGDLVIRGRIKELINRGGEKISPERVEGVLAGHPDVLEAAVFGRPDQLYGETVAAVIVTRGSAAP TADELASFCRERLAPFEVPAEFRRAAELPHTAKGSLDRRAVAEQFGESA
Sequences:
>Translated_529_residues MAMTSEATPSATAAGPRLADLVEAAAQRAPRAPALLVASERNPIAYADLVRLVDDLAARLRAAGLGPGDRVGLRAGSNPE FVVALLAASRADLVVAPLDPALPAADQLSRSRAVGARAVLVDRLGEGQTAPESAPCWPVTVTVGPDDGAPTVDLTVTAAP THDVTAPQGLRDDDAMIMFTGGTTGAPKMVPWTRHNIAASIRSIVAGYGLGPRDATVAVMPLYHGHGLLAALLATLASGG AVLLPARGKFSAHTFWDDIAAVGATWYTAVPTIHQILLERARTEAPRGTHALRFIRSCSAPLTAETAQALQDTFGAPVVC AFGMTEATHQVSTTAIDGAGHSENPGATPGLVGRSTGPDIRIAGPDGQSLPADTVGEVWLRGATVVRGYLGDPAITAANF TDGWLHTGDLGTLSAAGDLVIRGRIKELINRGGEKISPERVEGVLAGHPDVLEAAVFGRPDQLYGETVAAVIVTRGSAAP TADELASFCRERLAPFEVPAEFRRAAELPHTAKGSLDRRAVAEQFGESA >Mature_528_residues AMTSEATPSATAAGPRLADLVEAAAQRAPRAPALLVASERNPIAYADLVRLVDDLAARLRAAGLGPGDRVGLRAGSNPEF VVALLAASRADLVVAPLDPALPAADQLSRSRAVGARAVLVDRLGEGQTAPESAPCWPVTVTVGPDDGAPTVDLTVTAAPT HDVTAPQGLRDDDAMIMFTGGTTGAPKMVPWTRHNIAASIRSIVAGYGLGPRDATVAVMPLYHGHGLLAALLATLASGGA VLLPARGKFSAHTFWDDIAAVGATWYTAVPTIHQILLERARTEAPRGTHALRFIRSCSAPLTAETAQALQDTFGAPVVCA FGMTEATHQVSTTAIDGAGHSENPGATPGLVGRSTGPDIRIAGPDGQSLPADTVGEVWLRGATVVRGYLGDPAITAANFT DGWLHTGDLGTLSAAGDLVIRGRIKELINRGGEKISPERVEGVLAGHPDVLEAAVFGRPDQLYGETVAAVIVTRGSAAPT ADELASFCRERLAPFEVPAEFRRAAELPHTAKGSLDRRAVAEQFGESA
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI187761345, Length=526, Percent_Identity=30.2281368821293, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI187761343, Length=526, Percent_Identity=30.2281368821293, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI156151445, Length=545, Percent_Identity=27.5229357798165, Blast_Score=150, Evalue=2e-36, Organism=Homo sapiens, GI115511026, Length=537, Percent_Identity=24.3947858472998, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI157311624, Length=528, Percent_Identity=24.4318181818182, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI157311622, Length=528, Percent_Identity=24.4318181818182, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI58082049, Length=522, Percent_Identity=24.904214559387, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI122937307, Length=489, Percent_Identity=25.1533742331288, Blast_Score=112, Evalue=7e-25, Organism=Homo sapiens, GI38505220, Length=494, Percent_Identity=26.9230769230769, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI42544132, Length=527, Percent_Identity=22.3908918406072, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI42794760, Length=493, Percent_Identity=24.9492900608519, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI42794758, Length=493, Percent_Identity=24.9492900608519, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI42794756, Length=493, Percent_Identity=24.9492900608519, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI28416953, Length=541, Percent_Identity=23.4750462107209, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI62865631, Length=325, Percent_Identity=24.9230769230769, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI13325055, Length=325, Percent_Identity=24.9230769230769, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI40807491, Length=369, Percent_Identity=26.0162601626016, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI38524616, Length=482, Percent_Identity=25.5186721991701, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI13236579, Length=489, Percent_Identity=25.1533742331288, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI13375727, Length=532, Percent_Identity=24.2481203007519, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI8923896, Length=550, Percent_Identity=23.0909090909091, Blast_Score=70, Evalue=6e-12, Organism=Escherichia coli, GI221142682, Length=502, Percent_Identity=26.0956175298805, Blast_Score=155, Evalue=8e-39, Organism=Escherichia coli, GI1786810, Length=513, Percent_Identity=26.3157894736842, Blast_Score=138, Evalue=9e-34, Organism=Escherichia coli, GI1788107, Length=543, Percent_Identity=26.5193370165746, Blast_Score=138, Evalue=1e-33, Organism=Escherichia coli, GI145693145, Length=521, Percent_Identity=27.831094049904, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1789201, Length=362, Percent_Identity=27.6243093922652, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1788595, Length=503, Percent_Identity=24.4532803180915, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1786801, Length=527, Percent_Identity=24.8576850094877, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1790505, Length=535, Percent_Identity=24.1121495327103, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558820, Length=517, Percent_Identity=25.9187620889749, Blast_Score=142, Evalue=5e-34, Organism=Caenorhabditis elegans, GI71994694, Length=550, Percent_Identity=24, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71994703, Length=550, Percent_Identity=24, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71994690, Length=550, Percent_Identity=24, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17557194, Length=514, Percent_Identity=27.6264591439689, Blast_Score=139, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17531443, Length=527, Percent_Identity=23.719165085389, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17538037, Length=517, Percent_Identity=25.7253384912959, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17559526, Length=385, Percent_Identity=26.7532467532467, Blast_Score=126, Evalue=3e-29, Organism=Caenorhabditis elegans, GI32563687, Length=360, Percent_Identity=27.7777777777778, Blast_Score=122, Evalue=5e-28, Organism=Caenorhabditis elegans, GI17560308, Length=551, Percent_Identity=23.4119782214156, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560140, Length=493, Percent_Identity=22.1095334685598, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71996755, Length=464, Percent_Identity=25, Blast_Score=102, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17556552, Length=501, Percent_Identity=24.750499001996, Blast_Score=95, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17564090, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319699, Length=531, Percent_Identity=33.5216572504708, Blast_Score=286, Evalue=7e-78, Organism=Saccharomyces cerevisiae, GI6323182, Length=585, Percent_Identity=24.4444444444444, Blast_Score=90, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6319264, Length=594, Percent_Identity=24.4107744107744, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI21355181, Length=496, Percent_Identity=26.4112903225806, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI24581924, Length=549, Percent_Identity=26.2295081967213, Blast_Score=153, Evalue=2e-37, Organism=Drosophila melanogaster, GI18859661, Length=517, Percent_Identity=26.4990328820116, Blast_Score=151, Evalue=1e-36, Organism=Drosophila melanogaster, GI21356947, Length=522, Percent_Identity=22.7969348659004, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648255, Length=527, Percent_Identity=23.3396584440228, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI20130357, Length=496, Percent_Identity=23.5887096774194, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24648253, Length=487, Percent_Identity=23.8193018480493, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI21356441, Length=475, Percent_Identity=23.1578947368421, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21358303, Length=163, Percent_Identity=31.2883435582822, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24656500, Length=492, Percent_Identity=24.1869918699187, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI281365686, Length=202, Percent_Identity=27.7227722772277, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI24648257, Length=361, Percent_Identity=25.7617728531856, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI161076582, Length=494, Percent_Identity=23.4817813765182, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24653035, Length=483, Percent_Identity=23.1884057971014, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI19921316, Length=479, Percent_Identity=23.7995824634656, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648260, Length=524, Percent_Identity=22.3282442748092, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24667959, Length=379, Percent_Identity=26.3852242744063, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24667955, Length=379, Percent_Identity=26.3852242744063, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI62472339, Length=379, Percent_Identity=26.3852242744063, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI21355225, Length=531, Percent_Identity=22.2222222222222, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI19922652, Length=489, Percent_Identity=23.1083844580777, Blast_Score=77, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 54613; Mature: 54482
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMTSEATPSATAAGPRLADLVEAAAQRAPRAPALLVASERNPIAYADLVRLVDDLAARL CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH RAAGLGPGDRVGLRAGSNPEFVVALLAASRADLVVAPLDPALPAADQLSRSRAVGARAVL HHCCCCCCCCEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH VDRLGEGQTAPESAPCWPVTVTVGPDDGAPTVDLTVTAAPTHDVTAPQGLRDDDAMIMFT HHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEE GGTTGAPKMVPWTRHNIAASIRSIVAGYGLGPRDATVAVMPLYHGHGLLAALLATLASGG CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCC AVLLPARGKFSAHTFWDDIAAVGATWYTAVPTIHQILLERARTEAPRGTHALRFIRSCSA EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC PLTAETAQALQDTFGAPVVCAFGMTEATHQVSTTAIDGAGHSENPGATPGLVGRSTGPDI CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCE RIAGPDGQSLPADTVGEVWLRGATVVRGYLGDPAITAANFTDGWLHTGDLGTLSAAGDLV EEECCCCCCCCHHHHHHHHHCCHHHEEHHCCCCCEEECCCCCCCEECCCCCCCCCCCCEE IRGRIKELINRGGEKISPERVEGVLAGHPDVLEAAVFGRPDQLYGETVAAVIVTRGSAAP EHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHEEEEEEECCCCCC TADELASFCRERLAPFEVPAEFRRAAELPHTAKGSLDRRAVAEQFGESA CHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure AMTSEATPSATAAGPRLADLVEAAAQRAPRAPALLVASERNPIAYADLVRLVDDLAARL CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH RAAGLGPGDRVGLRAGSNPEFVVALLAASRADLVVAPLDPALPAADQLSRSRAVGARAVL HHCCCCCCCCEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH VDRLGEGQTAPESAPCWPVTVTVGPDDGAPTVDLTVTAAPTHDVTAPQGLRDDDAMIMFT HHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEE GGTTGAPKMVPWTRHNIAASIRSIVAGYGLGPRDATVAVMPLYHGHGLLAALLATLASGG CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCC AVLLPARGKFSAHTFWDDIAAVGATWYTAVPTIHQILLERARTEAPRGTHALRFIRSCSA EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC PLTAETAQALQDTFGAPVVCAFGMTEATHQVSTTAIDGAGHSENPGATPGLVGRSTGPDI CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCE RIAGPDGQSLPADTVGEVWLRGATVVRGYLGDPAITAANFTDGWLHTGDLGTLSAAGDLV EEECCCCCCCCHHHHHHHHHCCHHHEEHHCCCCCEEECCCCCCCEECCCCCCCCCCCCEE IRGRIKELINRGGEKISPERVEGVLAGHPDVLEAAVFGRPDQLYGETVAAVIVTRGSAAP EHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHEEEEEEECCCCCC TADELASFCRERLAPFEVPAEFRRAAELPHTAKGSLDRRAVAEQFGESA CHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]