| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409405
Identifier: 41409405
GI number: 41409405
Start: 3678281
End: 3679381
Strand: Reverse
Name: 41409405
Synonym: MAP3307c
Alternate gene names: NA
Gene position: 3679381-3678281 (Counterclockwise)
Preceding gene: 41409407
Following gene: 41409404
Centisome position: 76.18
GC content: 69.85
Gene sequence:
>1101_bases GTGTCCGGCGGCCGATTCGGGCGCGCCACCGACGGCGCGGCCGGGCGGCTGTGTAATCCTGGGAAAATGACGTCGCAGCG GCCCCCGCGCAGCACGGGTCGTGTGCCGGTGCTGCGCGACGAGTGGCGCGAACCGTTGCGCGCGCTTCGCGACCCGCTGG CCCGGGAAGCCGGGCGGACCCGCGCAGACCGGGAACGGCCGCGGCAGTGGCGCAAACAGACCTGGCTGGGGCGGTTCGTC TCCACCTACGGCTGGCGCGCATACGCCCTGCCCGCGCTGGTGGTGCTCACCGCCGTCGTCATCTACCAGACCGTGACCGG CACCAGCTCGCCGAAACCGACGGCCAGCCAGCCGATCCAGAGCCCGACCGCGATCGGCGCGGTGGGCACCACGATCATCG ACGCCCCGCCGCGCGGGCTCGCCGCGTTCGACGCCAACCTGCCGGCCGGCACATTGCCCGACGGCGGCCCGTTCACCGAA GCCGGCGACAAGACCTGGCACGTGGTGCCCGGCGTCACACCGCAGATCGGTCAGGGCACCGCCAAGGTGTTCAAGTACAG CGTCGAGGTGGAGAACGGCATCGACCCGACCATGTTCGGCGGCGACGACGCGTTCGCTCAGATGGTCGACCAGACGCTGG CCAACCCGAAGGGCTGGACGCACAACCCGCAGTTCGCGTTCATCCGGGTCGACGCGACCGCCGGCGCCAAGCCGGACTTT CGCATTTCGCTGGTGTCGCCGGTGACGGTCCGCGAGGGCTGCGGCTACGAATTCCGGCTCGAAACCTCTTGTTACAACCC GGTATTCGGGGCCAACCGGGAGGCGCGGGTCTTCATCAACGAGGCGCGTTGCGTGCGCGGCGCGGTGCCGTTCGAAGGGG ACGTCGGCTCCTACCGCCAATACGTGATCAACCACGAGGTCGGCCACGCCATCGGCTACCTGCACCACGAGCCGTGCGAA CAGCAGGGCGCGCTGGCGCCGGTGATGATGCAGCAGACGTTCTCCACGTCCAACAACGACGCCGCCCAGTTCGACCCCGA CGTCGTCAAGGCCGACGGCAAGACCTGCCGCTTCAATCCCTGGCCGTACCCGATCGCCTAG
Upstream 100 bases:
>100_bases TCGGTAAACCGGGGCCAGCCGCTCGCAGCTCGTTGCACAGACCTTACTACCCGCGGGGTTGATGCGACCGTGATCGACGT CGTCGTCGCTGGCAGAAGCG
Downstream 100 bases:
>100_bases CGGCCTCGTTGCCGCGCCGTGGGCGGGCTGCTGTGATGGTGGTAGACGGCTCGAATCGCTGAGCCGACCGACCTGCAGGA GACGTTTCCCGTGTCCACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MSGGRFGRATDGAAGRLCNPGKMTSQRPPRSTGRVPVLRDEWREPLRALRDPLAREAGRTRADRERPRQWRKQTWLGRFV STYGWRAYALPALVVLTAVVIYQTVTGTSSPKPTASQPIQSPTAIGAVGTTIIDAPPRGLAAFDANLPAGTLPDGGPFTE AGDKTWHVVPGVTPQIGQGTAKVFKYSVEVENGIDPTMFGGDDAFAQMVDQTLANPKGWTHNPQFAFIRVDATAGAKPDF RISLVSPVTVREGCGYEFRLETSCYNPVFGANREARVFINEARCVRGAVPFEGDVGSYRQYVINHEVGHAIGYLHHEPCE QQGALAPVMMQQTFSTSNNDAAQFDPDVVKADGKTCRFNPWPYPIA
Sequences:
>Translated_366_residues MSGGRFGRATDGAAGRLCNPGKMTSQRPPRSTGRVPVLRDEWREPLRALRDPLAREAGRTRADRERPRQWRKQTWLGRFV STYGWRAYALPALVVLTAVVIYQTVTGTSSPKPTASQPIQSPTAIGAVGTTIIDAPPRGLAAFDANLPAGTLPDGGPFTE AGDKTWHVVPGVTPQIGQGTAKVFKYSVEVENGIDPTMFGGDDAFAQMVDQTLANPKGWTHNPQFAFIRVDATAGAKPDF RISLVSPVTVREGCGYEFRLETSCYNPVFGANREARVFINEARCVRGAVPFEGDVGSYRQYVINHEVGHAIGYLHHEPCE QQGALAPVMMQQTFSTSNNDAAQFDPDVVKADGKTCRFNPWPYPIA >Mature_365_residues SGGRFGRATDGAAGRLCNPGKMTSQRPPRSTGRVPVLRDEWREPLRALRDPLAREAGRTRADRERPRQWRKQTWLGRFVS TYGWRAYALPALVVLTAVVIYQTVTGTSSPKPTASQPIQSPTAIGAVGTTIIDAPPRGLAAFDANLPAGTLPDGGPFTEA GDKTWHVVPGVTPQIGQGTAKVFKYSVEVENGIDPTMFGGDDAFAQMVDQTLANPKGWTHNPQFAFIRVDATAGAKPDFR ISLVSPVTVREGCGYEFRLETSCYNPVFGANREARVFINEARCVRGAVPFEGDVGSYRQYVINHEVGHAIGYLHHEPCEQ QGALAPVMMQQTFSTSNNDAAQFDPDVVKADGKTCRFNPWPYPIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39891; Mature: 39760
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGRFGRATDGAAGRLCNPGKMTSQRPPRSTGRVPVLRDEWREPLRALRDPLAREAGRT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC RADRERPRQWRKQTWLGRFVSTYGWRAYALPALVVLTAVVIYQTVTGTSSPKPTASQPIQ HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SPTAIGAVGTTIIDAPPRGLAAFDANLPAGTLPDGGPFTEAGDKTWHVVPGVTPQIGQGT CCCHHHHHCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC AKVFKYSVEVENGIDPTMFGGDDAFAQMVDQTLANPKGWTHNPQFAFIRVDATAGAKPDF EEEEEEEEEECCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCE RISLVSPVTVREGCGYEFRLETSCYNPVFGANREARVFINEARCVRGAVPFEGDVGSYRQ EEEEECCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCHHHHH YVINHEVGHAIGYLHHEPCEQQGALAPVMMQQTFSTSNNDAAQFDPDVVKADGKTCRFNP HHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCC WPYPIA CCCCCC >Mature Secondary Structure SGGRFGRATDGAAGRLCNPGKMTSQRPPRSTGRVPVLRDEWREPLRALRDPLAREAGRT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC RADRERPRQWRKQTWLGRFVSTYGWRAYALPALVVLTAVVIYQTVTGTSSPKPTASQPIQ HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SPTAIGAVGTTIIDAPPRGLAAFDANLPAGTLPDGGPFTEAGDKTWHVVPGVTPQIGQGT CCCHHHHHCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC AKVFKYSVEVENGIDPTMFGGDDAFAQMVDQTLANPKGWTHNPQFAFIRVDATAGAKPDF EEEEEEEEEECCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCE RISLVSPVTVREGCGYEFRLETSCYNPVFGANREARVFINEARCVRGAVPFEGDVGSYRQ EEEEECCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCHHHHH YVINHEVGHAIGYLHHEPCEQQGALAPVMMQQTFSTSNNDAAQFDPDVVKADGKTCRFNP HHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCC WPYPIA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA