| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is yusZ [H]
Identifier: 41409113
GI number: 41409113
Start: 3354635
End: 3355465
Strand: Direct
Name: yusZ [H]
Synonym: MAP3015
Alternate gene names: 41409113
Gene position: 3354635-3355465 (Clockwise)
Preceding gene: 41409112
Following gene: 41409116
Centisome position: 69.46
GC content: 69.31
Gene sequence:
>831_bases ATGGCACGCTGGCTGATCACGGGATGCTCCACCGGCTTCGGCCGCGAAATCGCCGGTGCGGCACTGCAAGCCGGCCACCG CGTGGTGGTGACGGCACGACGGGCCGACGCCGTTCGGGGTTTTGCCGAGGAATTCGGCGAGCTGGCGCTGCCGGTCGCGC TCGACGTGACCGACCGCGACCAGATCGCCGCCGCGGTGGCCGCGGCCGACGCGGCGTTCGGCGGCATCGACGTGCTGGTG AACAACGCCGGGCACGGCTACCTGTCGGCGGTGGAAGAGGGCGAGGACGCCGAGGTGCGAAAGCTGTTCGACGTCAACTA CTTCGGTGCGGTCGACATGATCAAGGCGGTGCTTCCTGGCATGCGCGCCCGCGGCTGCGGGCACATCGTCAACATCTCGT CGATGACCGGCCTGGTGGCCAACCCGCCCAACGCCTACTACTCGTCGACCAAGTTCGCGCTGGAGGCCGTCACCGAGGCG CTCGCCGCCGAGGTCCGCCCGTTGGGTATCAAGGTGACCGCGATCGAGCCGGGGGCCTTCCGCACCGATTGGGCCACCCG ATCGATGAAGGAGTCCGGCACGCCGATCGCCGACTACACCGACGTCGCGGCGCGCAAGGACCTGATCAAGCAGTTCGCCG ACCACCTGCCCGGCGACCCGCGCAAGGTGGCCGAGGCGGTGCTGATGGTGACCGGGCTGGACGAGCCGCCGCTGCGGCTG CTGCTCGGACGCGACGTTCTCAAGGCCATGCGGGACAAGATCGCCGCGATGTCGGCGTCGATCGACGAGTGGGAGGCCGT CACCAAGGACGTGAACTTCCCGGGCGCATAG
Upstream 100 bases:
>100_bases TGGCGCACCTGCCGCGGGTGAGCCCGCAGCAGCGGGCCGCCGAACTCGCGCAGCGCCGGGCCGGCTATCTGCGCCGCCTA CCCGAAGGGACGATCTAGCG
Downstream 100 bases:
>100_bases GCCGCTGTCGCCGCTGTGGCCCGCGAGCGGCCGGCGGCCCAACCGCGAGCGTCACACCAGCGTGGCGGCCGCCGGCGAGC GTCACGCCAGCGTGACGGCC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MARWLITGCSTGFGREIAGAALQAGHRVVVTARRADAVRGFAEEFGELALPVALDVTDRDQIAAAVAAADAAFGGIDVLV NNAGHGYLSAVEEGEDAEVRKLFDVNYFGAVDMIKAVLPGMRARGCGHIVNISSMTGLVANPPNAYYSSTKFALEAVTEA LAAEVRPLGIKVTAIEPGAFRTDWATRSMKESGTPIADYTDVAARKDLIKQFADHLPGDPRKVAEAVLMVTGLDEPPLRL LLGRDVLKAMRDKIAAMSASIDEWEAVTKDVNFPGA
Sequences:
>Translated_276_residues MARWLITGCSTGFGREIAGAALQAGHRVVVTARRADAVRGFAEEFGELALPVALDVTDRDQIAAAVAAADAAFGGIDVLV NNAGHGYLSAVEEGEDAEVRKLFDVNYFGAVDMIKAVLPGMRARGCGHIVNISSMTGLVANPPNAYYSSTKFALEAVTEA LAAEVRPLGIKVTAIEPGAFRTDWATRSMKESGTPIADYTDVAARKDLIKQFADHLPGDPRKVAEAVLMVTGLDEPPLRL LLGRDVLKAMRDKIAAMSASIDEWEAVTKDVNFPGA >Mature_275_residues ARWLITGCSTGFGREIAGAALQAGHRVVVTARRADAVRGFAEEFGELALPVALDVTDRDQIAAAVAAADAAFGGIDVLVN NAGHGYLSAVEEGEDAEVRKLFDVNYFGAVDMIKAVLPGMRARGCGHIVNISSMTGLVANPPNAYYSSTKFALEAVTEAL AAEVRPLGIKVTAIEPGAFRTDWATRSMKESGTPIADYTDVAARKDLIKQFADHLPGDPRKVAEAVLMVTGLDEPPLRLL LGRDVLKAMRDKIAAMSASIDEWEAVTKDVNFPGA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=254, Percent_Identity=35.0393700787402, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI20149619, Length=241, Percent_Identity=32.3651452282158, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI223718074, Length=280, Percent_Identity=33.5714285714286, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=35.0785340314136, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI44680136, Length=221, Percent_Identity=31.6742081447964, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI44680133, Length=221, Percent_Identity=31.6742081447964, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI17738292, Length=221, Percent_Identity=31.6742081447964, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=29.6747967479675, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI4503817, Length=184, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI119392083, Length=186, Percent_Identity=32.258064516129, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI19743808, Length=184, Percent_Identity=35.3260869565217, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI150247226, Length=184, Percent_Identity=35.3260869565217, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI59889578, Length=164, Percent_Identity=32.9268292682927, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI22507405, Length=181, Percent_Identity=33.1491712707182, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI210032110, Length=179, Percent_Identity=29.608938547486, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32483357, Length=201, Percent_Identity=32.3383084577114, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI40548397, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI214010158, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI214010156, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI22758144, Length=184, Percent_Identity=29.3478260869565, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI40254986, Length=205, Percent_Identity=32.6829268292683, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI142976729, Length=186, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=28.494623655914, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=28.4974093264249, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI7705925, Length=182, Percent_Identity=32.4175824175824, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=25.2688172043011, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI50726952, Length=182, Percent_Identity=32.4175824175824, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI19923817, Length=198, Percent_Identity=26.2626262626263, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4504503, Length=222, Percent_Identity=28.8288288288288, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI10190704, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI210032112, Length=107, Percent_Identity=36.4485981308411, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=35.2380952380952, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787820, Length=238, Percent_Identity=31.5126050420168, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=36.9791666666667, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=31.5508021390374, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=29.4871794871795, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790717, Length=191, Percent_Identity=31.413612565445, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87082160, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI2367175, Length=192, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789208, Length=185, Percent_Identity=29.7297297297297, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71982365, Length=187, Percent_Identity=34.2245989304813, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71997402, Length=197, Percent_Identity=30.4568527918782, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17567345, Length=185, Percent_Identity=29.7297297297297, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=31.5533980582524, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560332, Length=242, Percent_Identity=30.5785123966942, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=30.241935483871, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17558628, Length=185, Percent_Identity=32.972972972973, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI115534660, Length=182, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17563726, Length=246, Percent_Identity=27.2357723577236, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17570069, Length=197, Percent_Identity=29.4416243654822, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994604, Length=236, Percent_Identity=27.1186440677966, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI72000259, Length=189, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560150, Length=249, Percent_Identity=28.9156626506024, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17557780, Length=197, Percent_Identity=29.9492385786802, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=27.2030651340996, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17559104, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17507613, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17562906, Length=191, Percent_Identity=28.7958115183246, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71994600, Length=238, Percent_Identity=27.3109243697479, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI32563809, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560676, Length=233, Percent_Identity=27.4678111587983, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534694, Length=186, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=29.2079207920792, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17565030, Length=195, Percent_Identity=29.7435897435897, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17562908, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17544670, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17531453, Length=220, Percent_Identity=30, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=187, Percent_Identity=28.8770053475936, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=26.9230769230769, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=32.9842931937173, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=29.5698924731183, Blast_Score=83, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6322226, Length=184, Percent_Identity=30.9782608695652, Blast_Score=69, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=27.2277227722772, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI21358495, Length=239, Percent_Identity=32.6359832635983, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=33.1550802139037, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI281364892, Length=181, Percent_Identity=34.8066298342541, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007236, Length=223, Percent_Identity=31.390134529148, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=33.0049261083744, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI21356301, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24641388, Length=207, Percent_Identity=31.8840579710145, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28571526, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24580925, Length=190, Percent_Identity=32.1052631578947, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=32.1782178217822, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI116007232, Length=190, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24663911, Length=203, Percent_Identity=31.5270935960591, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=215, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355631, Length=166, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571387, Length=206, Percent_Identity=29.6116504854369, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007238, Length=190, Percent_Identity=31.0526315789474, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24648944, Length=189, Percent_Identity=30.1587301587302, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24643142, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=133, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648693, Length=228, Percent_Identity=29.3859649122807, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355889, Length=228, Percent_Identity=29.3859649122807, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI23397609, Length=225, Percent_Identity=30.6666666666667, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24584752, Length=223, Percent_Identity=26.0089686098655, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29270; Mature: 29138
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARWLITGCSTGFGREIAGAALQAGHRVVVTARRADAVRGFAEEFGELALPVALDVTDRD CCCEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHEECCEEEECCCHH QIAAAVAAADAAFGGIDVLVNNAGHGYLSAVEEGEDAEVRKLFDVNYFGAVDMIKAVLPG HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCC MRARGCGHIVNISSMTGLVANPPNAYYSSTKFALEAVTEALAAEVRPLGIKVTAIEPGAF CCCCCCCCEEEHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RTDWATRSMKESGTPIADYTDVAARKDLIKQFADHLPGDPRKVAEAVLMVTGLDEPPLRL CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH LLGRDVLKAMRDKIAAMSASIDEWEAVTKDVNFPGA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC >Mature Secondary Structure ARWLITGCSTGFGREIAGAALQAGHRVVVTARRADAVRGFAEEFGELALPVALDVTDRD CCEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHEECCEEEECCCHH QIAAAVAAADAAFGGIDVLVNNAGHGYLSAVEEGEDAEVRKLFDVNYFGAVDMIKAVLPG HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCC MRARGCGHIVNISSMTGLVANPPNAYYSSTKFALEAVTEALAAEVRPLGIKVTAIEPGAF CCCCCCCCEEEHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RTDWATRSMKESGTPIADYTDVAARKDLIKQFADHLPGDPRKVAEAVLMVTGLDEPPLRL CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH LLGRDVLKAMRDKIAAMSASIDEWEAVTKDVNFPGA HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]