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The map label for this gene is fadE25 [H]

Identifier: 41406780

GI number: 41406780

Start: 702768

End: 703850

Strand: Direct

Name: fadE25 [H]

Synonym: MAP0682

Alternate gene names: 41406780

Gene position: 702768-703850 (Clockwise)

Preceding gene: 41406779

Following gene: 41406781

Centisome position: 14.55

GC content: 67.22

Gene sequence:

>1083_bases
TTGGACTTTCGTGATTCACCCGACGAGGCCGCCTTCCGGGAGCGGCTGCGCTCTTGGCTTTCGTTGCACGCCAAGGAGTT
TGCCAGTTCCGGTGACGACTACTGGGCCCGGCAGGCCGAGTGGCACCAGGCCCTGTACCGCGAGGGCTTCTTCGGGCTGT
CGTGGCCCCGCGAGTACGGCGGCCAGGAGCTGGCGCCGGTGTACGACGTCATCGTGGACGAGGAACTGGCCCGGGCCGGG
GCGCCGCCGCGGCCCAGCGTGGGCTATCTGATCTACGGCATCGGCCGGCACGCCAGCGACGAACTGCGCCGGCGCTTCCT
GCCCGGCATCATCAATGGCACCGAGCGCTGGTGTCAGGGCTTCAGCGAGCCGGGCGCCGGTTCGGACCTGGCGTCGCTGA
CCACCACCGCCCGGCTGGAGGGCGACACCTACGTCGTCGACGGGCACAAGATCTGGACCAGTTACTCCGATGTCGCCGAC
TGGTGTCTGCTGCTGGCCCGCACCGATCCGCAGGCCAAGCGTCACCGCGGCCTGTCGGCGTTCATCCTCGAGATGAAACA
GCCTGGCGTACAACAGCGTCCGCTCCGCATGATCAACGGGGTGACCAACGAATTCGGTCAGGTGTTCTTCGACGGCGCCA
AGGTTCCCGCGGACCGGATGGTCGGTGCCCCCGGGGACGGGTGGGCGGTGGCCATGACGGTGGTCGGGCACGAACGCGAG
CCCTCCACGCTGGGGTATGCGGCTCGCTACGGCAAGATCGTCCGCAGCCTTTACGCGCGCACCGACGGCCCGGTGTGCGA
GGAATTGGCTTGGGCGGCAGTGCAATCGGAGATGCTCACGCATCACGTCCGGCGACGGCTGTCCGAGCAGCTGGACGGCG
TGTCGCACGGGCCCGAGGGATCGCTTGACAAGCTGCTGATGACCTGGGTCGAACAATCCGTCGGCCATGCCGCGCTGGCC
GTCGCGGGCACCCGGGACCCCGATCTGCTCAGCGCCTACCTGTACAGCCGGGCGCAAAGCGTCATGGGCGGGACATCACA
AATACAGAAGAACATCATCGCTTCACGGATCTTGGGATTGTAG

Upstream 100 bases:

>100_bases
GGCGGTATCGGCAACACCTGGGAGTGCGCGGCGCACGTCTACCTGCGCCGGGCCCTGACCTCGACCGAGCTGTGGCCGGT
CGCGTTGAAGGAGATCGATC

Downstream 100 bases:

>100_bases
GAGTGATCGCGAGCGCGGGCGAAGCCCGGGTGAAGCGGGTCACGACCATTAAACAAGGAGTGATCGCGAGCGCGGGCGAA
GCCCGGGTGAAGCGGGTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MDFRDSPDEAAFRERLRSWLSLHAKEFASSGDDYWARQAEWHQALYREGFFGLSWPREYGGQELAPVYDVIVDEELARAG
APPRPSVGYLIYGIGRHASDELRRRFLPGIINGTERWCQGFSEPGAGSDLASLTTTARLEGDTYVVDGHKIWTSYSDVAD
WCLLLARTDPQAKRHRGLSAFILEMKQPGVQQRPLRMINGVTNEFGQVFFDGAKVPADRMVGAPGDGWAVAMTVVGHERE
PSTLGYAARYGKIVRSLYARTDGPVCEELAWAAVQSEMLTHHVRRRLSEQLDGVSHGPEGSLDKLLMTWVEQSVGHAALA
VAGTRDPDLLSAYLYSRAQSVMGGTSQIQKNIIASRILGL

Sequences:

>Translated_360_residues
MDFRDSPDEAAFRERLRSWLSLHAKEFASSGDDYWARQAEWHQALYREGFFGLSWPREYGGQELAPVYDVIVDEELARAG
APPRPSVGYLIYGIGRHASDELRRRFLPGIINGTERWCQGFSEPGAGSDLASLTTTARLEGDTYVVDGHKIWTSYSDVAD
WCLLLARTDPQAKRHRGLSAFILEMKQPGVQQRPLRMINGVTNEFGQVFFDGAKVPADRMVGAPGDGWAVAMTVVGHERE
PSTLGYAARYGKIVRSLYARTDGPVCEELAWAAVQSEMLTHHVRRRLSEQLDGVSHGPEGSLDKLLMTWVEQSVGHAALA
VAGTRDPDLLSAYLYSRAQSVMGGTSQIQKNIIASRILGL
>Mature_360_residues
MDFRDSPDEAAFRERLRSWLSLHAKEFASSGDDYWARQAEWHQALYREGFFGLSWPREYGGQELAPVYDVIVDEELARAG
APPRPSVGYLIYGIGRHASDELRRRFLPGIINGTERWCQGFSEPGAGSDLASLTTTARLEGDTYVVDGHKIWTSYSDVAD
WCLLLARTDPQAKRHRGLSAFILEMKQPGVQQRPLRMINGVTNEFGQVFFDGAKVPADRMVGAPGDGWAVAMTVVGHERE
PSTLGYAARYGKIVRSLYARTDGPVCEELAWAAVQSEMLTHHVRRRLSEQLDGVSHGPEGSLDKLLMTWVEQSVGHAALA
VAGTRDPDLLSAYLYSRAQSVMGGTSQIQKNIIASRILGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958414, Length=209, Percent_Identity=31.1004784688995, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI226958412, Length=242, Percent_Identity=28.099173553719, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI4501859, Length=381, Percent_Identity=24.6719160104987, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI4557233, Length=339, Percent_Identity=24.4837758112094, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI4557231, Length=191, Percent_Identity=30.3664921465969, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI187960098, Length=191, Percent_Identity=30.3664921465969, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI4501857, Length=389, Percent_Identity=22.879177377892, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI76496475, Length=236, Percent_Identity=28.3898305084746, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI4557235, Length=236, Percent_Identity=28.3898305084746, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI48976061, Length=171, Percent_Identity=29.8245614035088, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI211971008, Length=171, Percent_Identity=29.8245614035088, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI21361497, Length=211, Percent_Identity=27.0142180094787, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7656849, Length=232, Percent_Identity=25.4310344827586, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87081958, Length=382, Percent_Identity=25.3926701570681, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786223, Length=248, Percent_Identity=25, Blast_Score=65, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=244, Percent_Identity=30.7377049180328, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17570075, Length=392, Percent_Identity=26.2755102040816, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17551932, Length=198, Percent_Identity=28.2828282828283, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=252, Percent_Identity=26.1904761904762, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534899, Length=229, Percent_Identity=27.9475982532751, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=387, Percent_Identity=23.5142118863049, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17505929, Length=198, Percent_Identity=26.7676767676768, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17569725, Length=224, Percent_Identity=26.3392857142857, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71985184, Length=203, Percent_Identity=29.064039408867, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71985192, Length=205, Percent_Identity=29.7560975609756, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=203, Percent_Identity=29.064039408867, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982178, Length=254, Percent_Identity=25.1968503937008, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24646207, Length=345, Percent_Identity=26.6666666666667, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24666513, Length=349, Percent_Identity=25.214899713467, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI21356377, Length=194, Percent_Identity=30.4123711340206, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355753, Length=201, Percent_Identity=30.8457711442786, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24660351, Length=151, Percent_Identity=29.1390728476821, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI281363737, Length=239, Percent_Identity=27.6150627615063, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 39911; Mature: 39911

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFRDSPDEAAFRERLRSWLSLHAKEFASSGDDYWARQAEWHQALYREGFFGLSWPREYG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHC
GQELAPVYDVIVDEELARAGAPPRPSVGYLIYGIGRHASDELRRRFLPGIINGTERWCQG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCHHCCCHHHHHCC
FSEPGAGSDLASLTTTARLEGDTYVVDGHKIWTSYSDVADWCLLLARTDPQAKRHRGLSA
CCCCCCCCHHHHHHHHHEECCCEEEECCHHHHCCHHHHHHHHHHHHCCCCHHHHHCCHHH
FILEMKQPGVQQRPLRMINGVTNEFGQVFFDGAKVPADRMVGAPGDGWAVAMTVVGHERE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCC
PSTLGYAARYGKIVRSLYARTDGPVCEELAWAAVQSEMLTHHVRRRLSEQLDGVSHGPEG
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SLDKLLMTWVEQSVGHAALAVAGTRDPDLLSAYLYSRAQSVMGGTSQIQKNIIASRILGL
CHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDFRDSPDEAAFRERLRSWLSLHAKEFASSGDDYWARQAEWHQALYREGFFGLSWPREYG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHC
GQELAPVYDVIVDEELARAGAPPRPSVGYLIYGIGRHASDELRRRFLPGIINGTERWCQG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCHHCCCHHHHHCC
FSEPGAGSDLASLTTTARLEGDTYVVDGHKIWTSYSDVADWCLLLARTDPQAKRHRGLSA
CCCCCCCCHHHHHHHHHEECCCEEEECCHHHHCCHHHHHHHHHHHHCCCCHHHHHCCHHH
FILEMKQPGVQQRPLRMINGVTNEFGQVFFDGAKVPADRMVGAPGDGWAVAMTVVGHERE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCC
PSTLGYAARYGKIVRSLYARTDGPVCEELAWAAVQSEMLTHHVRRRLSEQLDGVSHGPEG
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SLDKLLMTWVEQSVGHAALAVAGTRDPDLLSAYLYSRAQSVMGGTSQIQKNIIASRILGL
CHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]