Click here to switch to the map view.

The map label for this gene is yagA [H]

Identifier: 41406526

GI number: 41406526

Start: 455420

End: 456607

Strand: Direct

Name: yagA [H]

Synonym: MAP0428

Alternate gene names: 41406526

Gene position: 455420-456607 (Clockwise)

Preceding gene: 41406525

Following gene: 41406528

Centisome position: 9.43

GC content: 65.66

Gene sequence:

>1188_bases
ATGAAGGAGTTAACCGTGGCCGAGCAGAGGTATCAGGCCGTGTTGGCGGTGATCAGCGATGGGTTGTCGATTTCGCTGGT
TGCCGAGAAGGTAGGCGTGTCGCGCCAGACGCTGCACGCGTGGTTGGCCCGCTATGAGGCGTCGGGCCTTGAGGGGCTGG
TGGATCGGTCGCATCGGCCGGTGTCGTGTCCGCACCAGATGCCGGCCGTGGTGGAGGCCGCCCTGTTGGAGCGGCGCCGG
TCGCGGCCGTACTGGGGACCACGGCGGCTGGTGTTCGAGCTGGCTAAGCGTCGGGTGGGTCCGGTGCCGTCGGAGTCGGC
GGTGTATCGGGCCTTGGTGCGGGCGGGCATGATCGATCCGGCTTTGCGGGATCGGCGTTCGCGCAAGTGGAAACGTTGGG
AACGCGGCGCCCCGATGGAGCTGTGGCAGATGGATGTGGTGGGGGGTTTCCCGCTGGCCGATGGCACCAGCGCCAAAGCG
TTGACCGGCATCGACGACCATTCCCGGATGTGTGTCTGCGCGCGGTTGATGGCGCGTGAGCGTACCCGCGCGGTTTGCGA
CGGATTGCGGGCGGCGCTGGCGGCTTACGGGGCCCCCCAGCAGATTTTGACTGATAACGGCAAGGTGTTCACCGGCCGGT
TTAACCATCCCCCGGTGGAGGTGCTCTTCGACGCGATCTGCCGGCAAAACGGCATCGACCACCTGCTCACCCAGCCGCGT
AGCCCGACGACGACAGGCAAGATTGAGCGGTTCCACCGCAGTCTGCGCGCCGAATTCCTCAGCAACACAAGGGCTTTCTC
AAATCTGAAGACGGCTCAGCAAGCCCTCGACGAATGGGTGCACTACTACAACACCGCCCGTCCGCATCAATCGCTGAACA
TGACCACCCCAGCCGAACGGTTCACCGCCACCGCCTCGCCGGTGAGCCCTGGCGACGACGTACCCGCCAGCATCGACCGA
GACGGCCAGGACTGGGTCAGCCGCCGGGTAACGACCAACGGGGTGGTCAGTGTGGCCTGGCAGCAGGTCTGCGTGGGAGC
CCACTACGCCGGGGCCCGCTGCGATGTCCACGTCGACGGTGAGCTGCTGCGGTTCTGGATCGGCGACCAGTTAGTCAAGA
CCGCTGCGCGCACCAACCATGCAGAGGTAAGAAACAAACGGGCCTTCCGCACCCGCGAACAGGCCTAA

Upstream 100 bases:

>100_bases
TGACCTCGGTTGATGCTTGACGTTTCGGCTTCGGGTGATGCCTGACAGTGTTTCGGCTGATGCTTGACAGTTACTTCGGC
TGATCCTTGACACTCCTTCG

Downstream 100 bases:

>100_bases
CCACTAACCCAGAGTGTCAAGGATCAACCGACATAGAAATGTCACCCATCAACCGACTCTGAACAGGGGCTCCGTTTGTC
TGGCGCCGAGCGTCACGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRPVSCPHQMPAVVEAALLERRR
SRPYWGPRRLVFELAKRRVGPVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKA
LTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQQILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPR
SPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAERFTATASPVSPGDDVPASIDR
DGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA

Sequences:

>Translated_395_residues
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRPVSCPHQMPAVVEAALLERRR
SRPYWGPRRLVFELAKRRVGPVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKA
LTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQQILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPR
SPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAERFTATASPVSPGDDVPASIDR
DGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA
>Mature_395_residues
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRPVSCPHQMPAVVEAALLERRR
SRPYWGPRRLVFELAKRRVGPVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKA
LTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQQILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPR
SPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAERFTATASPVSPGDDVPASIDR
DGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=363, Percent_Identity=30.5785123966942, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 44237; Mature: 44237

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRP
CCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCC
VSCPHQMPAVVEAALLERRRSRPYWGPRRLVFELAKRRVGPVPSESAVYRALVRAGMIDP
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
ALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKALTGIDDHSRMCVCARLMARE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
RTRAVCDGLRAALAAYGAPQQILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPR
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCHHHHCCCC
SPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
FTATASPVSPGDDVPASIDRDGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDG
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECH
ELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRP
CCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCC
VSCPHQMPAVVEAALLERRRSRPYWGPRRLVFELAKRRVGPVPSESAVYRALVRAGMIDP
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH
ALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKALTGIDDHSRMCVCARLMARE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHH
RTRAVCDGLRAALAAYGAPQQILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPR
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCHHHHCCCC
SPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
FTATASPVSPGDDVPASIDRDGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDG
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECH
ELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]