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The map label for this gene is virB11

Identifier: 41223310

GI number: 41223310

Start: 192293

End: 193327

Strand: Direct

Name: virB11

Synonym: Atu6177

Alternate gene names: 41223310

Gene position: 192293-193327 (Clockwise)

Preceding gene: 16119792

Following gene: 16119794

Centisome position: 89.76

GC content: 55.17

Gene sequence:

>1035_bases
ATGGAGGTGGATCCGCAATTACGAATCCTTCTCAAGCCGATTTTGGAATGGCTCGATGACCCGCGGACCGAAGAAGTTGC
GATAAATCGACCTGGGGAGGCATTTGTGCGCCAGGCCGGCGCCTTCCTCAAGTTCCCTTTGCCTGTCTCCTATGACGATC
TCGAAGATATCGCTATTTTAGCAGGCGCGCTGAGAAAACAGGACGTTGGACCACGCAACCCACTTTGCGCAACTGAACTT
CCAGACGGCGAGCGGCTGCAGATCTGTTTGCCGCCGACGGTACCATCGGGCACCGTCAGCTTGACGATTCGACGGCCAAG
TTCCCGTGTTTCTAGTCTCAAAGAAGTCTCGTCCCGTTACGATGCTCCGAGGTGGAATCAGTGGAAGGAACGAAAAAAAC
GGCATGATCAGCATGATGAAGCTATCCTTCGGTACTATGACAACGGGGATCTGGAGGCGTTTCTGCACGCATGTGTCGTT
GGTCGGTTGACGATGCTGCTTTGCGGACCCACCGGGAGTGGCAAGACAACGATGAGCAAGACCTTGATCAACGCTATCCC
GCCGCAGGAAAGGCTGATTACCATCGAAGATACGCTCGAACTCGTCATTCCACACGAGAACCACGTAAGGCTGCTTTATT
CTAAGAATGGGGCTGGGCTGGGCGCAGTTACCGCTGAGCACCTGCTACAGGCTAGCCTGCGCATGCGACCGGACCGAATA
CTGCTCGGCGAGATACGCGACGATGCCGCGTGGGCTTATCTGAGTGAAGTCGTCTCAGGGCATCCGGGATCGATTTCCAC
AATACATGGTGCCAATCCCGTCCAAGGTTTCAAAAAGCTATTTTCGCTCGTGAAAAGCAGCGCTCAGGGGGCTAGCTTGG
AAGATCGCACCCTGATTGACATGCTCGCAACCGCAGTTGATGTCATCGTACCCTTCCGTGCCCACGGTGACATTTACGAG
GTGGGCGAAATCTGGCTCGCTGCCGATGCGCGTCGGCGCGGTGAGACAATAGGCGATCTTCTTAACCAGCAGTAG

Upstream 100 bases:

>100_bases
GGCATATACCAGCTTCGTATGGCTGGTCGCGCGGCGCGGGGGCGGGATCGCCGTCCATAACGAATTCAACTTATCACTTA
CAGATGGAGATACGATACAA

Downstream 100 bases:

>100_bases
TTGTGATCCATGTTTCTAAATGCCGCATGGCGCGTTGTAGAATTACGTTTGTAGCAATGCTCAGCAATCTTTGTCATCAA
ACGGAGACATCTAGTTTGCA

Product: type IV secretion system protein VirB11

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MEVDPQLRILLKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLPVSYDDLEDIAILAGALRKQDVGPRNPLCATEL
PDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWKERKKRHDQHDEAILRYYDNGDLEAFLHACVV
GRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI
LLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDVIVPFRAHGDIYE
VGEIWLAADARRRGETIGDLLNQQ

Sequences:

>Translated_344_residues
MEVDPQLRILLKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLPVSYDDLEDIAILAGALRKQDVGPRNPLCATEL
PDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWKERKKRHDQHDEAILRYYDNGDLEAFLHACVV
GRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI
LLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDVIVPFRAHGDIYE
VGEIWLAADARRRGETIGDLLNQQ
>Mature_344_residues
MEVDPQLRILLKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLPVSYDDLEDIAILAGALRKQDVGPRNPLCATEL
PDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWKERKKRHDQHDEAILRYYDNGDLEAFLHACVV
GRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI
LLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDVIVPFRAHGDIYE
VGEIWLAADARRRGETIGDLLNQQ

Specific function: Required for the transfer of T-DNA to plants. Couples energy, by means of ATP hydrolysis, to T-DNA transport

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRBB_AGRT5 (P07169)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- EMBL:   Y00535
- EMBL:   M36786
- PIR:   AG3249
- PIR:   S12351
- RefSeq:   NP_396498.2
- ProteinModelPortal:   P07169
- SMR:   P07169
- STRING:   P07169
- GeneID:   1137500
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6177
- eggNOG:   COG0630
- HOGENOM:   HBG742142
- OMA:   GERLQIC
- ProtClustDB:   PRK13851
- BioCyc:   ATUM176299-1:ATU6177-MONOMER
- GO:   GO:0005737
- GO:   GO:0009405
- InterPro:   IPR014155
- InterPro:   IPR001482
- TIGRFAMs:   TIGR02788

Pfam domain/function: PF00437 GSPII_E

EC number: NA

Molecular weight: Translated: 38140; Mature: 38140

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVDPQLRILLKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLPVSYDDLEDIAIL
CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCEEECCCCCCCCCHHHHHHH
AGALRKQDVGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRY
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHC
DAPRWNQWKERKKRHDQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSK
CCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
TLINAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI
HHHHHCCCHHHEEEEECCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
LLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLID
EEECCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MLATAVDVIVPFRAHGDIYEVGEIWLAADARRRGETIGDLLNQQ
HHHHHHHHHHCCCCCCCEEEHHHEEEECCHHHHCHHHHHHHCCC
>Mature Secondary Structure
MEVDPQLRILLKPILEWLDDPRTEEVAINRPGEAFVRQAGAFLKFPLPVSYDDLEDIAIL
CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCEEECCCCCCCCCHHHHHHH
AGALRKQDVGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRY
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHC
DAPRWNQWKERKKRHDQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSK
CCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
TLINAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI
HHHHHCCCHHHEEEEECCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
LLGEIRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLID
EEECCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MLATAVDVIVPFRAHGDIYEVGEIWLAADARRRGETIGDLLNQQ
HHHHHHHHHHCCCCCCCEEEHHHEEEECCHHHHCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194; 3448462