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The map label for this gene is virB10

Identifier: 16119792

GI number: 16119792

Start: 191119

End: 192252

Strand: Direct

Name: virB10

Synonym: Atu6176

Alternate gene names: 16119792

Gene position: 191119-192252 (Clockwise)

Preceding gene: 16119791

Following gene: 41223310

Centisome position: 89.21

GC content: 57.85

Gene sequence:

>1134_bases
ATGAACGACGACAATCAGCAATCGGCGCATGATGTCGATGCGTCGGGGTCCCTGGTCTCCGACACACATCACCGGCGCCT
TTCGGGGGCTCAAAAGTTGATCGTAGGAGGTGTAGTTCTCGCGCTATCACTTAGCCTCATTTGGCTTGGCGGGCGTGAAA
AGAAGGAAAACGGGGACGCACCCCCGTCAACCATGATCGCCACGAACACCAAGCCATTTCATCCGGCTCCGATTGACGTT
ACACTTGATCCTCCGGCTGCCCAGGAAGCTGTTCAGCCGACTGCTCCTCCGCCAGCACGAAGTGAGCCGGAACGGCATGA
GCCGCGGCCGGAAGAAACACCGATTTTTGCGTACACCAGTGGTGATCAAGGGACCAGCAAGCGCGTTCAACAAGGCGAAA
CGGACCGAAGACGCGAAGGCAATGGGGAAGACAGTCCTTTGCCGAAGGTCGAAGTGTCCGCCGAGAATGATCTCTCGATA
CGCATGAAGCCCACCGAGCTGCAGCCCACCAGGGCTACGCTCTTGCCTCATCCCGACTTCATGGTGACGGAGGGGACGAT
TATTCCATGTATCTTGCAAACGGCAATCGACACCAGTCTGGCAGGCTATGTAAAATGCGTGTTACCCTGGGATGTTCGTG
GAACAACGAACAACGTTGTGCTTCTTGATCGCGGCACCACCGTTGTTGGCGAGATCCAGCGCGGTTTGCAACAGGGAGAT
GCGCGTGTTTTTGTGCTCTGGGATCGGGCGGAGACACCCGACCATGCCATGATTTCGCTTGCGTCACCAAGCGCTGACGA
ACTCGGTCGCTCGGGATTGCCGGGCACCGTCGACAATCACTTCTGGCAGCGCTTTAGCGGGGCCATGCTCTTGAGTGTCG
TCCAAGGTGCCTTCCAGGCAGCGAGCACCTACGCTGGCAGCTCGGGTGGAGGGACGAGCTTCAACAGCGTCCAGAATAAC
GGTGAACAAACGGCAGACACAGCCCTCAAGGCCACGATCAACATACCGCCAACCCTGAAGAAGAATCAGGGCGACACGGT
CTCCATTTTTGTCGCACGGGATCTCGATTTCTCAGGCATATACCAGCTTCGTATGGCTGGTCGCGCGGCGCGGGGGCGGG
ATCGCCGTCCATAA

Upstream 100 bases:

>100_bases
TATTATGCATTTGGAATACCGCCTACGATCCCGTCGGCCGCAGGCCGGAGACGGGCACTGTGAGGCCCGATGTGAAGCGC
GTCCTAAAGGAGGTGAGAGG

Downstream 100 bases:

>100_bases
CGAATTCAACTTATCACTTACAGATGGAGATACGATACAAATGGAGGTGGATCCGCAATTACGAATCCTTCTCAAGCCGA
TTTTGGAATGGCTCGATGAC

Product: type IV secretion system protein VirB10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNDDNQQSAHDVDASGSLVSDTHHRRLSGAQKLIVGGVVLALSLSLIWLGGREKKENGDAPPSTMIATNTKPFHPAPIDV
TLDPPAAQEAVQPTAPPPARSEPERHEPRPEETPIFAYTSGDQGTSKRVQQGETDRRREGNGEDSPLPKVEVSAENDLSI
RMKPTELQPTRATLLPHPDFMVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGTTNNVVLLDRGTTVVGEIQRGLQQGD
ARVFVLWDRAETPDHAMISLASPSADELGRSGLPGTVDNHFWQRFSGAMLLSVVQGAFQAASTYAGSSGGGTSFNSVQNN
GEQTADTALKATINIPPTLKKNQGDTVSIFVARDLDFSGIYQLRMAGRAARGRDRRP

Sequences:

>Translated_377_residues
MNDDNQQSAHDVDASGSLVSDTHHRRLSGAQKLIVGGVVLALSLSLIWLGGREKKENGDAPPSTMIATNTKPFHPAPIDV
TLDPPAAQEAVQPTAPPPARSEPERHEPRPEETPIFAYTSGDQGTSKRVQQGETDRRREGNGEDSPLPKVEVSAENDLSI
RMKPTELQPTRATLLPHPDFMVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGTTNNVVLLDRGTTVVGEIQRGLQQGD
ARVFVLWDRAETPDHAMISLASPSADELGRSGLPGTVDNHFWQRFSGAMLLSVVQGAFQAASTYAGSSGGGTSFNSVQNN
GEQTADTALKATINIPPTLKKNQGDTVSIFVARDLDFSGIYQLRMAGRAARGRDRRP
>Mature_377_residues
MNDDNQQSAHDVDASGSLVSDTHHRRLSGAQKLIVGGVVLALSLSLIWLGGREKKENGDAPPSTMIATNTKPFHPAPIDV
TLDPPAAQEAVQPTAPPPARSEPERHEPRPEETPIFAYTSGDQGTSKRVQQGETDRRREGNGEDSPLPKVEVSAENDLSI
RMKPTELQPTRATLLPHPDFMVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGTTNNVVLLDRGTTVVGEIQRGLQQGD
ARVFVLWDRAETPDHAMISLASPSADELGRSGLPGTVDNHFWQRFSGAMLLSVVQGAFQAASTYAGSSGGGTSFNSVQNN
GEQTADTALKATINIPPTLKKNQGDTVSIFVARDLDFSGIYQLRMAGRAARGRDRRP

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRBA_AGRT5 (P17800)

Other databases:

- EMBL:   X53264
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AF3249
- PIR:   S12350
- RefSeq:   NP_053390.1
- RefSeq:   NP_396497.1
- ProteinModelPortal:   P17800
- SMR:   P17800
- IntAct:   P17800
- STRING:   P17800
- GeneID:   1137499
- GeneID:   1224144
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6176
- eggNOG:   COG2948
- HOGENOM:   HBG662288
- OMA:   TIIPCIL
- ProtClustDB:   PRK13855
- BioCyc:   ATUM176299-1:ATU6176-MONOMER
- InterPro:   IPR005498

Pfam domain/function: PF03743 TrbI

EC number: NA

Molecular weight: Translated: 40556; Mature: 40556

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xad8af30)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDNQQSAHDVDASGSLVSDTHHRRLSGAQKLIVGGVVLALSLSLIWLGGREKKENGDA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
PPSTMIATNTKPFHPAPIDVTLDPPAAQEAVQPTAPPPARSEPERHEPRPEETPIFAYTS
CCCCEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEC
GDQGTSKRVQQGETDRRREGNGEDSPLPKVEVSAENDLSIRMKPTELQPTRATLLPHPDF
CCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCEEECCCCCE
MVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGTTNNVVLLDRGTTVVGEIQRGLQQGD
EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
ARVFVLWDRAETPDHAMISLASPSADELGRSGLPGTVDNHFWQRFSGAMLLSVVQGAFQA
CEEEEEECCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ASTYAGSSGGGTSFNSVQNNGEQTADTALKATINIPPTLKKNQGDTVSIFVARDLDFSGI
HHHCCCCCCCCCCCHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEEEEECCCHHHH
YQLRMAGRAARGRDRRP
HHHHHHCHHHCCCCCCH
>Mature Secondary Structure
MNDDNQQSAHDVDASGSLVSDTHHRRLSGAQKLIVGGVVLALSLSLIWLGGREKKENGDA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
PPSTMIATNTKPFHPAPIDVTLDPPAAQEAVQPTAPPPARSEPERHEPRPEETPIFAYTS
CCCCEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEC
GDQGTSKRVQQGETDRRREGNGEDSPLPKVEVSAENDLSIRMKPTELQPTRATLLPHPDF
CCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCEEECCCCCE
MVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGTTNNVVLLDRGTTVVGEIQRGLQQGD
EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
ARVFVLWDRAETPDHAMISLASPSADELGRSGLPGTVDNHFWQRFSGAMLLSVVQGAFQA
CEEEEEECCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ASTYAGSSGGGTSFNSVQNNGEQTADTALKATINIPPTLKKNQGDTVSIFVARDLDFSGI
HHHCCCCCCCCCCCHHHHCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEEEEECCCHHHH
YQLRMAGRAARGRDRRP
HHHHHHCHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2370849; 2194232; 2233252; 11743193; 11743194