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The map label for this gene is yccM [H]

Identifier: 39998243

GI number: 39998243

Start: 3459731

End: 3460738

Strand: Reverse

Name: yccM [H]

Synonym: GSU3153

Alternate gene names: 39998243

Gene position: 3460738-3459731 (Counterclockwise)

Preceding gene: 39998244

Following gene: 39998242

Centisome position: 90.73

GC content: 65.28

Gene sequence:

>1008_bases
ATGAACAATCGGCATCAGCATGCACGTATCACCCTCTGGCGCTCCCTGGTCCAGTGGGGCTTCTTCGCCTGGGTTGTCGT
CATCGGCATCCGCTTCGGCGTCTTTGTCCGCCACTTCGAGACCGGCGGCGCAACGCCGCTGATTTCCCGCCCGCCGGGAG
TGGAGGGATTTCTTCCCATCGGTGCCTTGGCCGGCACGAAGCTCTGGCTTGCCACCGGCACCATCAACCCGGTCCACCCG
GCAGCCCTGGTCATCTTCCTGACCATCGTCGGCATGAGCCTTGTGGCGAAGAAGTCGTTCTGCTCCTGGCTCTGTCCGGT
GGGGACCCTGTCGGAGGCGGCCTGGAAGCTGGGACAACGGCTCTTTGGCCGCAACTTCCGGGTCTGGCCCCGGCTCGACC
GGGTCCTGCGGGGGGCGAAGTACCTGCTGCTTCTCTTTTTCGTCAAGATCATCCTGGTCGACATGCCGGTCTTTGCCCTG
GCGGCCTTTCTCGAAACCCCCTACTGGGCCGTGAGCGACGTGAAGATGCTTCACTTCTTTACTCGGATGTCGGGCACCAC
CGTGGCGACTCTCCTCGTACTCACGGCACTGTCGCTGCTCTACAAAAACGCTTGGTGCCGCTATCTCTGCCCCTACGGCG
CGCTGTTGGGGGTGGCGAGTTTTCTGAGTCCCTTCAAGATCCGGCGCGACGCGGCCGGCTGCACCGGCTGCCGCAGCTGC
TCCAGGGCCTGCCCGTCCGGGCTTCCGGTCCACGAGCGCGAGACAATCCGCTCCGCCGAATGCACCGGCTGCCTCACCTG
CGTGGCCAGCTGTCCCCAACGGGAGGTGCTCCGGATGGCGCCACCCCTCTGGCGACAGCCGCTCCCGGCATGGGTGTTCC
CTGCCGTGGTGCTGCTCCTCTTCGCCGCCGGCATCGGCACCGGTATGGCCACCGGCGCCTGGCAGAGCTCACTTACCTAT
GAGGACTACCGGCAGCTCATCCCCATGGTGCCGTACCTGAGCCACTGA

Upstream 100 bases:

>100_bases
CCCGTTGGCGGCCAAGGAAAAGTAGTCACGATGGCAGCGGGGCCGGGGCCGGTATCAGTCCCTGCCGGCTCCGGTACCGC
TGCTGCGCGAGGCACTACCC

Downstream 100 bases:

>100_bases
GAGGATGGGAGGGGCTTGACCCCCGTCCAAGACGGGGTACCGTTTATCATTCAACGTGGGAGAACAGGAGGTGTTGCATG
GCTGACGATACGAACGATGT

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNNRHQHARITLWRSLVQWGFFAWVVVIGIRFGVFVRHFETGGATPLISRPPGVEGFLPIGALAGTKLWLATGTINPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPRLDRVLRGAKYLLLLFFVKIILVDMPVFAL
AAFLETPYWAVSDVKMLHFFTRMSGTTVATLLVLTALSLLYKNAWCRYLCPYGALLGVASFLSPFKIRRDAAGCTGCRSC
SRACPSGLPVHERETIRSAECTGCLTCVASCPQREVLRMAPPLWRQPLPAWVFPAVVLLLFAAGIGTGMATGAWQSSLTY
EDYRQLIPMVPYLSH

Sequences:

>Translated_335_residues
MNNRHQHARITLWRSLVQWGFFAWVVVIGIRFGVFVRHFETGGATPLISRPPGVEGFLPIGALAGTKLWLATGTINPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPRLDRVLRGAKYLLLLFFVKIILVDMPVFAL
AAFLETPYWAVSDVKMLHFFTRMSGTTVATLLVLTALSLLYKNAWCRYLCPYGALLGVASFLSPFKIRRDAAGCTGCRSC
SRACPSGLPVHERETIRSAECTGCLTCVASCPQREVLRMAPPLWRQPLPAWVFPAVVLLLFAAGIGTGMATGAWQSSLTY
EDYRQLIPMVPYLSH
>Mature_335_residues
MNNRHQHARITLWRSLVQWGFFAWVVVIGIRFGVFVRHFETGGATPLISRPPGVEGFLPIGALAGTKLWLATGTINPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPRLDRVLRGAKYLLLLFFVKIILVDMPVFAL
AAFLETPYWAVSDVKMLHFFTRMSGTTVATLLVLTALSLLYKNAWCRYLCPYGALLGVASFLSPFKIRRDAAGCTGCRSC
SRACPSGLPVHERETIRSAECTGCLTCVASCPQREVLRMAPPLWRQPLPAWVFPAVVLLLFAAGIGTGMATGAWQSSLTY
EDYRQLIPMVPYLSH

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=331, Percent_Identity=47.1299093655589, Blast_Score=283, Evalue=8e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37151; Mature: 37151

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRHQHARITLWRSLVQWGFFAWVVVIGIRFGVFVRHFETGGATPLISRPPGVEGFLPI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
GALAGTKLWLATGTINPVHPAALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQR
HHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LFGRNFRVWPRLDRVLRGAKYLLLLFFVKIILVDMPVFALAAFLETPYWAVSDVKMLHFF
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
TRMSGTTVATLLVLTALSLLYKNAWCRYLCPYGALLGVASFLSPFKIRRDAAGCTGCRSC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SRACPSGLPVHERETIRSAECTGCLTCVASCPQREVLRMAPPLWRQPLPAWVFPAVVLLL
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCCHHHHHHHHHHH
FAAGIGTGMATGAWQSSLTYEDYRQLIPMVPYLSH
HHHHHCCCCCCCCHHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNRHQHARITLWRSLVQWGFFAWVVVIGIRFGVFVRHFETGGATPLISRPPGVEGFLPI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
GALAGTKLWLATGTINPVHPAALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQR
HHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LFGRNFRVWPRLDRVLRGAKYLLLLFFVKIILVDMPVFALAAFLETPYWAVSDVKMLHFF
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
TRMSGTTVATLLVLTALSLLYKNAWCRYLCPYGALLGVASFLSPFKIRRDAAGCTGCRSC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SRACPSGLPVHERETIRSAECTGCLTCVASCPQREVLRMAPPLWRQPLPAWVFPAVVLLL
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCCHHHHHHHHHHH
FAAGIGTGMATGAWQSSLTYEDYRQLIPMVPYLSH
HHHHHCCCCCCCCHHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]