Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 39998242

GI number: 39998242

Start: 3459198

End: 3459653

Strand: Reverse

Name: yddU [C]

Synonym: GSU3152

Alternate gene names: 39998242

Gene position: 3459653-3459198 (Counterclockwise)

Preceding gene: 39998243

Following gene: 39998241

Centisome position: 90.71

GC content: 67.11

Gene sequence:

>456_bases
ATGGCTGACGATACGAACGATGTCCTGTACCGCTTGGTTGCCGAGGGAGTTCCCGATGCCGTTGTCTACGCCGACCGGGA
GGGGGTCATCCGTCTTTGGAGCCCCGGGGCTGAACGGATGTTCGGCTTTGCCGCAGCCGAGGCGGTGGGGCAGTCCCTGG
ACCTCATCATTCCCGAAAACCTGCGGGCCCGTCACTGGGAAGGGTACCGCCGGGTCATGGAGACCGGTACGACCCGCTAT
GGCACCAAGCTGCTCACGGCACCGGCCCTGCGGGCCGACGGCAGTCGCCTGTCCACCGAATTCTCCATGGCGCTCGTGCG
CGACGAGGCCGGTACCATGGCCGGCAGCGGCGCCGTGATCCGCGACGTGACCGATCGCTGGCTGAAGGAAAAGGATATGA
AAGAGCGCCTGGCGGAGCTGGAACGGTGCTGCGGCGCCGACCGGCCCGGCCGGTAG

Upstream 100 bases:

>100_bases
TGGTGCCGTACCTGAGCCACTGAGAGGATGGGAGGGGCTTGACCCCCGTCCAAGACGGGGTACCGTTTATCATTCAACGT
GGGAGAACAGGAGGTGTTGC

Downstream 100 bases:

>100_bases
CGCGTAGGCGCGAAAAGAAGGAACCGCATGGAGTATTTCATCGCAGGACAGGCCCTTTGCTGGGGGCTCGTTGCGGCGGC
CGCCCTGCTCTGGAAAAGAG

Product: sensory box protein

Products: NA

Alternate protein names: Sensory Box Protein; PAS Sensor Protein; Transcriptional Regulator; PAS/PAC Sensor Hybrid Histidine Kinase; PAS/PAC Sensor Signal Transduction Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase; Multi-Sensor Hybrid Histidine Kinase; Signal Transduction Histidine Kinase; Hybrid Sensor Histidine Kinase; HTR-Like Protein; PAS Sensor Signal Transduction Histidine Kinase; Oxygen Sensory Histidine Kinase FixL; Signal-Transducing Histidine Kinase; Diguanylate Cyclase With PAS/PAC Sensor; Two-Component Sensor Histidine Kinase Protein; PAS/PAC Domain-Containing Protein; Pas/Pac Sensor Hybrid Histidine Kinase; Sensory Box Histidine Kinase/Response Regulator; PAS Fold Family; Two Component Sensor Histidine Kinase; Two-Component System Sensory/Regulatory Protein Putative; Sensor/Response Regulatory Hybrid Protein; Signal Transduction Protein; Signal Sensor Protein Isolated PAS Domain; Sensor Histidine Kinase Of Two-Component; Globin; Sensory Box/GGDEF Family Protein; Histidine Protein Kinase

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MADDTNDVLYRLVAEGVPDAVVYADREGVIRLWSPGAERMFGFAAAEAVGQSLDLIIPENLRARHWEGYRRVMETGTTRY
GTKLLTAPALRADGSRLSTEFSMALVRDEAGTMAGSGAVIRDVTDRWLKEKDMKERLAELERCCGADRPGR

Sequences:

>Translated_151_residues
MADDTNDVLYRLVAEGVPDAVVYADREGVIRLWSPGAERMFGFAAAEAVGQSLDLIIPENLRARHWEGYRRVMETGTTRY
GTKLLTAPALRADGSRLSTEFSMALVRDEAGTMAGSGAVIRDVTDRWLKEKDMKERLAELERCCGADRPGR
>Mature_150_residues
ADDTNDVLYRLVAEGVPDAVVYADREGVIRLWSPGAERMFGFAAAEAVGQSLDLIIPENLRARHWEGYRRVMETGTTRYG
TKLLTAPALRADGSRLSTEFSMALVRDEAGTMAGSGAVIRDVTDRWLKEKDMKERLAELERCCGADRPGR

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16736; Mature: 16605

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDTNDVLYRLVAEGVPDAVVYADREGVIRLWSPGAERMFGFAAAEAVGQSLDLIIPEN
CCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC
LRARHWEGYRRVMETGTTRYGTKLLTAPALRADGSRLSTEFSMALVRDEAGTMAGSGAVI
CCHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
RDVTDRWLKEKDMKERLAELERCCGADRPGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADDTNDVLYRLVAEGVPDAVVYADREGVIRLWSPGAERMFGFAAAEAVGQSLDLIIPEN
CCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC
LRARHWEGYRRVMETGTTRYGTKLLTAPALRADGSRLSTEFSMALVRDEAGTMAGSGAVI
CCHHHHHHHHHHHHCCCCCCCCHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
RDVTDRWLKEKDMKERLAELERCCGADRPGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA