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The map label for this gene is ycbY [C]

Identifier: 39998176

GI number: 39998176

Start: 3391779

End: 3392954

Strand: Reverse

Name: ycbY [C]

Synonym: GSU3086

Alternate gene names: 39998176

Gene position: 3392954-3391779 (Counterclockwise)

Preceding gene: 39998177

Following gene: 39998175

Centisome position: 88.96

GC content: 63.86

Gene sequence:

>1176_bases
ATGTCGTCGGTTATTGTGCGCAAACGTACCGCAGTCACTCCCCTTTCGGGCGAGCATGCCTTCTTCGCCACCACAGCCAA
GGGGGTTGAGGATGTCCTGGCCGCCGAGATGCGCGGCCTCGGTTTTCGCGGGGTGGCCATAGAGCGCGGAGGAGTGCGTT
TCGCGGGCGATCTTGCCGCCTGCTACCGGGCCAACCTCTGGCTGCGGACCGCGAGCCGCATCCTCGTGCCGCTTGCCCAA
TTCCCCTGCGATTCACCCCAGCGGCTATATGACGGTGTCCGCTCCATCCAGTGGAACGACTGGCTCACCCCCGACATGAC
CCTGGCAGTTGAGTGCAATCTTCGCGATTCGGTTCTGACCCATTCAGGGTTCGTGGCTCTCAAGACCAAGGACGCTATAG
TCGACACCATCCGTGACCGCCACGGCAGGCGACCCAGCGTGAATCCCAAGCAGCCGGATCTCGGGGTCCATGTTCATCTG
GTCCGTAACGTCTGCACCGTGAGCCTTGACAGTTCCGGCGCCAGCCTCGACCGGCGCGGCTACCGTACCGAGGCGGGTGA
GGCCCCGTTGCGGGAAACTCTTGCCGCCGCCCTCGTGGAGATGACGGGGTGGGACGGCACCGTTCCTCTCCTAGACCCCA
TGTGCGGCTCGGGTACCATCCTCGTGGAGGCGGCGCTCAAGGCGCTCAATCGGGCGCCCGGTCTCATTCGGGAGCGTTTC
GGATTCCAGCACTGGCCCAGCTTCGACTCTTCACTCTGGCTCCGTCTTGTAACCGAAGCACGCCAGGGGGAGCGCACTTC
ACTTGAGTCCCCCCTCCTGGGGAGCGATCAGCAGGCTGACCTTCTCTCTGTCGCCGCAGCCAATGCCCGGCGGGCCGGTG
TCGAGCAGCACATTTCCTTTACGTCTGGCGATGTGCGTGGCCTGACACCACCTCCCGCTCCTGGCATTATTCTCTTCAAC
CCTCCTTATGGCAGGAGGCTCGGCGATGAAGAAGGGCTTCGGGTCCTCTACCGCCAGATCGGTGACGTTCTGAAGCAGCG
CTGCGCCGGCTATACCGCCTGGCTGCTCACCGGTGGGCCCGAGTTGGCCAAGGCGGTGGGGCTCAGGGCATCCCGGCGGA
TCGTCCTCTTCAACGGCCCCCTTGAGTGCCGTTTCCTGAGGTTTGATCTCTACTGA

Upstream 100 bases:

>100_bases
GATCAATCCCCGGGAGGCTCAGATCGGCGCCCCCCATATTTCTCTCGCATGCGGCGCCCTTGAAGGGCTTGCCGGCATCA
AATCCTGTCTGGAGTAATTC

Downstream 100 bases:

>100_bases
CGGGTGCATTGGTCCGAGGGTGGCATTTCACAATTCCCTTGACGCCTTGCGTGGTTTGCCGTAAAGTTAAAGTTCGCTTT
TCGGGCCTATAGCTCAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSSVIVRKRTAVTPLSGEHAFFATTAKGVEDVLAAEMRGLGFRGVAIERGGVRFAGDLAACYRANLWLRTASRILVPLAQ
FPCDSPQRLYDGVRSIQWNDWLTPDMTLAVECNLRDSVLTHSGFVALKTKDAIVDTIRDRHGRRPSVNPKQPDLGVHVHL
VRNVCTVSLDSSGASLDRRGYRTEAGEAPLRETLAAALVEMTGWDGTVPLLDPMCGSGTILVEAALKALNRAPGLIRERF
GFQHWPSFDSSLWLRLVTEARQGERTSLESPLLGSDQQADLLSVAAANARRAGVEQHISFTSGDVRGLTPPPAPGIILFN
PPYGRRLGDEEGLRVLYRQIGDVLKQRCAGYTAWLLTGGPELAKAVGLRASRRIVLFNGPLECRFLRFDLY

Sequences:

>Translated_391_residues
MSSVIVRKRTAVTPLSGEHAFFATTAKGVEDVLAAEMRGLGFRGVAIERGGVRFAGDLAACYRANLWLRTASRILVPLAQ
FPCDSPQRLYDGVRSIQWNDWLTPDMTLAVECNLRDSVLTHSGFVALKTKDAIVDTIRDRHGRRPSVNPKQPDLGVHVHL
VRNVCTVSLDSSGASLDRRGYRTEAGEAPLRETLAAALVEMTGWDGTVPLLDPMCGSGTILVEAALKALNRAPGLIRERF
GFQHWPSFDSSLWLRLVTEARQGERTSLESPLLGSDQQADLLSVAAANARRAGVEQHISFTSGDVRGLTPPPAPGIILFN
PPYGRRLGDEEGLRVLYRQIGDVLKQRCAGYTAWLLTGGPELAKAVGLRASRRIVLFNGPLECRFLRFDLY
>Mature_390_residues
SSVIVRKRTAVTPLSGEHAFFATTAKGVEDVLAAEMRGLGFRGVAIERGGVRFAGDLAACYRANLWLRTASRILVPLAQF
PCDSPQRLYDGVRSIQWNDWLTPDMTLAVECNLRDSVLTHSGFVALKTKDAIVDTIRDRHGRRPSVNPKQPDLGVHVHLV
RNVCTVSLDSSGASLDRRGYRTEAGEAPLRETLAAALVEMTGWDGTVPLLDPMCGSGTILVEAALKALNRAPGLIRERFG
FQHWPSFDSSLWLRLVTEARQGERTSLESPLLGSDQQADLLSVAAANARRAGVEQHISFTSGDVRGLTPPPAPGIILFNP
PYGRRLGDEEGLRVLYRQIGDVLKQRCAGYTAWLLTGGPELAKAVGLRASRRIVLFNGPLECRFLRFDLY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=371, Percent_Identity=40.9703504043127, Blast_Score=263, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42824; Mature: 42692

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVIVRKRTAVTPLSGEHAFFATTAKGVEDVLAAEMRGLGFRGVAIERGGVRFAGDLAA
CCCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHH
CYRANLWLRTASRILVPLAQFPCDSPQRLYDGVRSIQWNDWLTPDMTLAVECNLRDSVLT
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHC
HSGFVALKTKDAIVDTIRDRHGRRPSVNPKQPDLGVHVHLVRNVCTVSLDSSGASLDRRG
CCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEHEEECCEEEEEECCCCCCCCCCC
YRTEAGEAPLRETLAAALVEMTGWDGTVPLLDPMCGSGTILVEAALKALNRAPGLIRERF
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHC
GFQHWPSFDSSLWLRLVTEARQGERTSLESPLLGSDQQADLLSVAAANARRAGVEQHISF
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCEE
TSGDVRGLTPPPAPGIILFNPPYGRRLGDEEGLRVLYRQIGDVLKQRCAGYTAWLLTGGP
CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
ELAKAVGLRASRRIVLFNGPLECRFLRFDLY
HHHHHHCCCCCCEEEEECCCCEEEEEEEECC
>Mature Secondary Structure 
SSVIVRKRTAVTPLSGEHAFFATTAKGVEDVLAAEMRGLGFRGVAIERGGVRFAGDLAA
CCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHH
CYRANLWLRTASRILVPLAQFPCDSPQRLYDGVRSIQWNDWLTPDMTLAVECNLRDSVLT
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHC
HSGFVALKTKDAIVDTIRDRHGRRPSVNPKQPDLGVHVHLVRNVCTVSLDSSGASLDRRG
CCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEHEEECCEEEEEECCCCCCCCCCC
YRTEAGEAPLRETLAAALVEMTGWDGTVPLLDPMCGSGTILVEAALKALNRAPGLIRERF
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHC
GFQHWPSFDSSLWLRLVTEARQGERTSLESPLLGSDQQADLLSVAAANARRAGVEQHISF
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCEE
TSGDVRGLTPPPAPGIILFNPPYGRRLGDEEGLRVLYRQIGDVLKQRCAGYTAWLLTGGP
CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
ELAKAVGLRASRRIVLFNGPLECRFLRFDLY
HHHHHHCCCCCCEEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]