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The map label for this gene is yqfO [H]

Identifier: 39998175

GI number: 39998175

Start: 3390382

End: 3391509

Strand: Reverse

Name: yqfO [H]

Synonym: GSU3085

Alternate gene names: 39998175

Gene position: 3391509-3390382 (Counterclockwise)

Preceding gene: 39998176

Following gene: 39998174

Centisome position: 88.92

GC content: 60.46

Gene sequence:

>1128_bases
TTGCCTTTGATGATGACGCCAAAAGTCTCTGACATACTCGGAATTATTAATAAATTTGCTCCACCAGTTCTTGCCGAAGA
GTGGGACAACGTGGGGTTGCTGGTTGGGGACCCGACCTGTGCCGTTTCACGGATCATGGTCGCCCTGGACGGCACCCGGG
AAACCGTGGATGCCGCCATCGCCGCAGACTGCCAGCTCCTGCTCACCCACCACCCGTTCCTTTTCCGTCCCCTCAAGCGA
ATAACCGCCAACGATCCGACCGGGGCAACCGTGCTGCGGGCCATTTCAGGCGGGTTAGCCGTTATTTCGCTCCACACCAA
CTACGATATCGCCGATGGCGGCATGAATGACCTTCTGGCGCAACGGCTCGACATGTGCTCTGCTCACCCCCTGTCGGTGA
CGGCGACCGAAGAGCTGGTCAAGCTTGCGGTCTTTGTTCCCCTAGGCCATGAAGAGCAGGTGTCCGAGGCCTTGTTTCGC
TTCAGCGGCACTGTGGGCACCTACCGGGACTGTTCGTTCAGAAGCGGCGGTACCGGCACGTTTCGTCCCCTTGAAGGGGC
ACGTCCCTTCCTGGGGACAGTCGGGGTCAGGGAGCAGGTGGCGGAAACCCGTATCGAGGTTCTGGTGCGCAAGGATGCGG
TTTCGTCCGCGGTCTCAGCTCTCCTGAAAGCTCATCCCTACGAGGAGCCCGCCTTTGATCTCTACCCGCTTCTCAATCGC
GGGGCTGCACAAGGCCTCGGCAGGATCGGCTATCTGGCGGAGGAGACGACGCTGGCTCTCTTTGCCGATGCCGTGAAAGC
AAAGCTGGGACTTGCTGGCGTCAGGCTCGTGGGTGACGCGGGGAAGCGGGTGAAGAAGGTCGCACTCTGCGGTGGCAGCG
GTATGTCACTGTTGCGTGATGCCCACCGTCAGGGAGCGGACGTATTCGTTACCGGGGATGTGAAGTATCATGAAGCACGG
GATGCGGAGGCTCTCGGTATCGCTCTGCTGGATGCCGGGCATTTCGGCACGGAGGCCATCATGGTATCCGGAGTCGCGGA
GCGGCTGACGGCTGATCTGGTCCTGAAGGGGTTCGAGGCTGACGTGGTTGCGTTCAATGGTGAGCGGGATCCATTCGTCT
GGCGATAA

Upstream 100 bases:

>100_bases
AGGTAGGAAGATGCGGGGATGCCCCGAGAGCTCCGATTACGATCGCAGGAACTGATCAGACGAAAAAGAGTGCACGCCGA
ACGGTGGCACTCTTTTTCTT

Downstream 100 bases:

>100_bases
ACGGTTTCTTCCGGGAGACTGACAAACGGAGAACAGAGGGAGGTTGGTGTTGCGTAAACATCTCATACTGCTTGAGGAAC
TGCAGGAGCTCGATCTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPLMMTPKVSDILGIINKFAPPVLAEEWDNVGLLVGDPTCAVSRIMVALDGTRETVDAAIAADCQLLLTHHPFLFRPLKR
ITANDPTGATVLRAISGGLAVISLHTNYDIADGGMNDLLAQRLDMCSAHPLSVTATEELVKLAVFVPLGHEEQVSEALFR
FSGTVGTYRDCSFRSGGTGTFRPLEGARPFLGTVGVREQVAETRIEVLVRKDAVSSAVSALLKAHPYEEPAFDLYPLLNR
GAAQGLGRIGYLAEETTLALFADAVKAKLGLAGVRLVGDAGKRVKKVALCGGSGMSLLRDAHRQGADVFVTGDVKYHEAR
DAEALGIALLDAGHFGTEAIMVSGVAERLTADLVLKGFEADVVAFNGERDPFVWR

Sequences:

>Translated_375_residues
MPLMMTPKVSDILGIINKFAPPVLAEEWDNVGLLVGDPTCAVSRIMVALDGTRETVDAAIAADCQLLLTHHPFLFRPLKR
ITANDPTGATVLRAISGGLAVISLHTNYDIADGGMNDLLAQRLDMCSAHPLSVTATEELVKLAVFVPLGHEEQVSEALFR
FSGTVGTYRDCSFRSGGTGTFRPLEGARPFLGTVGVREQVAETRIEVLVRKDAVSSAVSALLKAHPYEEPAFDLYPLLNR
GAAQGLGRIGYLAEETTLALFADAVKAKLGLAGVRLVGDAGKRVKKVALCGGSGMSLLRDAHRQGADVFVTGDVKYHEAR
DAEALGIALLDAGHFGTEAIMVSGVAERLTADLVLKGFEADVVAFNGERDPFVWR
>Mature_374_residues
PLMMTPKVSDILGIINKFAPPVLAEEWDNVGLLVGDPTCAVSRIMVALDGTRETVDAAIAADCQLLLTHHPFLFRPLKRI
TANDPTGATVLRAISGGLAVISLHTNYDIADGGMNDLLAQRLDMCSAHPLSVTATEELVKLAVFVPLGHEEQVSEALFRF
SGTVGTYRDCSFRSGGTGTFRPLEGARPFLGTVGVREQVAETRIEVLVRKDAVSSAVSALLKAHPYEEPAFDLYPLLNRG
AAQGLGRIGYLAEETTLALFADAVKAKLGLAGVRLVGDAGKRVKKVALCGGSGMSLLRDAHRQGADVFVTGDVKYHEARD
AEALGIALLDAGHFGTEAIMVSGVAERLTADLVLKGFEADVVAFNGERDPFVWR

Specific function: Unknown

COG id: COG3323

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Homo sapiens, GI209862879, Length=369, Percent_Identity=30.6233062330623, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI215272360, Length=369, Percent_Identity=30.6233062330623, Blast_Score=138, Evalue=9e-33,
Organism=Homo sapiens, GI56605983, Length=369, Percent_Identity=30.6233062330623, Blast_Score=138, Evalue=9e-33,
Organism=Homo sapiens, GI215272362, Length=121, Percent_Identity=38.8429752066116, Blast_Score=92, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321217, Length=164, Percent_Identity=28.0487804878049, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI19921430, Length=126, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 39977; Mature: 39846

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMMTPKVSDILGIINKFAPPVLAEEWDNVGLLVGDPTCAVSRIMVALDGTRETVDAAI
CCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHEECCCHHHHHHHH
AADCQLLLTHHPFLFRPLKRITANDPTGATVLRAISGGLAVISLHTNYDIADGGMNDLLA
HHCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
QRLDMCSAHPLSVTATEELVKLAVFVPLGHEEQVSEALFRFSGTVGTYRDCSFRSGGTGT
HHHHHCCCCCCEEEHHHHHHEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FRPLEGARPFLGTVGVREQVAETRIEVLVRKDAVSSAVSALLKAHPYEEPAFDLYPLLNR
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
GAAQGLGRIGYLAEETTLALFADAVKAKLGLAGVRLVGDAGKRVKKVALCGGSGMSLLRD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHEEEEEEECCCCHHHHHH
AHRQGADVFVTGDVKYHEARDAEALGIALLDAGHFGTEAIMVSGVAERLTADLVLKGFEA
HHHCCCCEEEECCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
DVVAFNGERDPFVWR
EEEEECCCCCCCCCC
>Mature Secondary Structure 
PLMMTPKVSDILGIINKFAPPVLAEEWDNVGLLVGDPTCAVSRIMVALDGTRETVDAAI
CCCCCCCHHHHHHHHHHHCCCHHHHCCCCCEEEECCCHHHHHHHHHEECCCHHHHHHHH
AADCQLLLTHHPFLFRPLKRITANDPTGATVLRAISGGLAVISLHTNYDIADGGMNDLLA
HHCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
QRLDMCSAHPLSVTATEELVKLAVFVPLGHEEQVSEALFRFSGTVGTYRDCSFRSGGTGT
HHHHHCCCCCCEEEHHHHHHEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
FRPLEGARPFLGTVGVREQVAETRIEVLVRKDAVSSAVSALLKAHPYEEPAFDLYPLLNR
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
GAAQGLGRIGYLAEETTLALFADAVKAKLGLAGVRLVGDAGKRVKKVALCGGSGMSLLRD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHEEEEEEECCCCHHHHHH
AHRQGADVFVTGDVKYHEARDAEALGIALLDAGHFGTEAIMVSGVAERLTADLVLKGFEA
HHHCCCCEEEECCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
DVVAFNGERDPFVWR
EEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]