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The map label for this gene is cbiD

Identifier: 39998088

GI number: 39998088

Start: 3291016

End: 3292104

Strand: Reverse

Name: cbiD

Synonym: GSU2997

Alternate gene names: 39998088

Gene position: 3292104-3291016 (Counterclockwise)

Preceding gene: 39998089

Following gene: 39998087

Centisome position: 86.31

GC content: 68.69

Gene sequence:

>1089_bases
GTGTCTGGCCGGGAGCTTCGCCACGGCTACACCACTGGTGCCTGCGCCGCGGCCGCGGCTGCCGGAGCGGCCCGGATGCT
CCGGCGCCAGGAGCTGGCGGACGAGGCCGAGATCGTCCTGCCCCGGGGAGAGCGGGTGGCCTTCCGTCTCCACGGCCAGG
AGTTCACCGAGACCTGGGCCACCTGCCACGTGGTGAAGGACGCCGGCGACGACCCAGATGTGACCAACGGCGCCGAAATC
CACGCAACCGTCCGGCGCGAGGCCCTCAACCGGCCCGGCGCCCGGACCATGGTCTTTGTCACCGGCGGCCGCGGGGTGGG
GACGATCACCAAGCCGGGGCTTGCCGTGCCGGTGGGTGAACCTGCCATCAACCCCGTGCCCATGCGCATGATCACCGAGG
CGGTCAAGGCCGAGTTTTCGGTTGTCTGCCTTCCCCAGATCCTCACGGTCACCGTCTCCATTCCCAATGGCGAAGAACTG
GCGAAAAAGACCCTCAATGCCCGCCTGGGCATCGTGGGGGGGCTCTCCATCCTCGGGACCACCGGCATCGTCCGGCCCAT
CTCGGCCAAGGCCTGGACCGACACCCTCGACGCCGCCATTGATGTGGCCCTGGCCTGCGGCTGCCGGACCCTGGTCCTCT
CCACCGGCCGGACGAGTGAGCTGGTGGTCCAGGGGGCTCTGGCCGGGGAGCATCTGCGGGAAGAGGCCTGCGTGATGATG
GGCGATCACGTGGGGTACGCGCTCCGGGCCTGCGCCCGCAAGGGGGCGGAACAGGCGGTTCTCGCGGGTCAGTTCGCCAA
GCTCCTGAAGATCGCCTGCGGCCATGAGCAGACCCATGTCTCCTCCTCCGAACTTGACTTGCGGCTGCTGGCCGAATGGA
TCGCCGCCACCCCTGCCGCCTCGCATCTGGCGTCGCTCGTTGAAGGTGCCAACACCGCCCGGCAGGTGCTGGAGGCGTCG
GGCAATGACCCCGCCCTCATGGAGCTGGTCTGCAGCCGGGCCCGGGAAGCGGCCCGGCTGCTGGCTCCTTCCCTGCGCAT
CAAGGTTTTGCTGGCGGGCTACGATTCAACGGTGCTATATTTCGGATAA

Upstream 100 bases:

>100_bases
GGTGGGCAAGGAAGAGCTGGGCAAGGACGAACTGCGGGAGCAGGCCCTGGCCATGCTTGCGTCGGGTGTTCCCCTCCCGG
CGATCCTGGGGTAGGGTGCG

Downstream 100 bases:

>100_bases
AATGTTCGCTCTGTCCTGCAATTTGCCATAAAGGAGGTTTCCCCATGCCTCATCAGAAAATTTATCTCGTCGGCGCCGGC
ATCGAAGGGTGGGAGGGGTT

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSGRELRHGYTTGACAAAAAAGAARMLRRQELADEAEIVLPRGERVAFRLHGQEFTETWATCHVVKDAGDDPDVTNGAEI
HATVRREALNRPGARTMVFVTGGRGVGTITKPGLAVPVGEPAINPVPMRMITEAVKAEFSVVCLPQILTVTVSIPNGEEL
AKKTLNARLGIVGGLSILGTTGIVRPISAKAWTDTLDAAIDVALACGCRTLVLSTGRTSELVVQGALAGEHLREEACVMM
GDHVGYALRACARKGAEQAVLAGQFAKLLKIACGHEQTHVSSSELDLRLLAEWIAATPAASHLASLVEGANTARQVLEAS
GNDPALMELVCSRAREAARLLAPSLRIKVLLAGYDSTVLYFG

Sequences:

>Translated_362_residues
MSGRELRHGYTTGACAAAAAAGAARMLRRQELADEAEIVLPRGERVAFRLHGQEFTETWATCHVVKDAGDDPDVTNGAEI
HATVRREALNRPGARTMVFVTGGRGVGTITKPGLAVPVGEPAINPVPMRMITEAVKAEFSVVCLPQILTVTVSIPNGEEL
AKKTLNARLGIVGGLSILGTTGIVRPISAKAWTDTLDAAIDVALACGCRTLVLSTGRTSELVVQGALAGEHLREEACVMM
GDHVGYALRACARKGAEQAVLAGQFAKLLKIACGHEQTHVSSSELDLRLLAEWIAATPAASHLASLVEGANTARQVLEAS
GNDPALMELVCSRAREAARLLAPSLRIKVLLAGYDSTVLYFG
>Mature_361_residues
SGRELRHGYTTGACAAAAAAGAARMLRRQELADEAEIVLPRGERVAFRLHGQEFTETWATCHVVKDAGDDPDVTNGAEIH
ATVRREALNRPGARTMVFVTGGRGVGTITKPGLAVPVGEPAINPVPMRMITEAVKAEFSVVCLPQILTVTVSIPNGEELA
KKTLNARLGIVGGLSILGTTGIVRPISAKAWTDTLDAAIDVALACGCRTLVLSTGRTSELVVQGALAGEHLREEACVMMG
DHVGYALRACARKGAEQAVLAGQFAKLLKIACGHEQTHVSSSELDLRLLAEWIAATPAASHLASLVEGANTARQVLEASG
NDPALMELVCSRAREAARLLAPSLRIKVLLAGYDSTVLYFG

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_GEOSL (P61985)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_954039.1
- ProteinModelPortal:   P61985
- SMR:   P61985
- GeneID:   2685702
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU2997
- NMPDR:   fig|243231.1.peg.2977
- TIGR:   GSU2997
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   CLSK829046
- BioCyc:   GSUL243231:GSU_2997-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 38083; Mature: 37952

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRELRHGYTTGACAAAAAAGAARMLRRQELADEAEIVLPRGERVAFRLHGQEFTETWA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCHHHHHHHH
TCHVVKDAGDDPDVTNGAEIHATVRREALNRPGARTMVFVTGGRGVGTITKPGLAVPVGE
HEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCC
PAINPVPMRMITEAVKAEFSVVCLPQILTVTVSIPNGEELAKKTLNARLGIVGGLSILGT
CCCCCCCHHHHHHHHHHCCEEEEECEEEEEEEECCCHHHHHHHHHHHHHHHEECHHHHCC
TGIVRPISAKAWTDTLDAAIDVALACGCRTLVLSTGRTSELVVQGALAGEHLREEACVMM
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHEEEHHHHHHHHHHHHHHHH
GDHVGYALRACARKGAEQAVLAGQFAKLLKIACGHEQTHVSSSELDLRLLAEWIAATPAA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCHH
SHLASLVEGANTARQVLEASGNDPALMELVCSRAREAARLLAPSLRIKVLLAGYDSTVLY
HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEE
FG
EC
>Mature Secondary Structure 
SGRELRHGYTTGACAAAAAAGAARMLRRQELADEAEIVLPRGERVAFRLHGQEFTETWA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCHHHHHHHH
TCHVVKDAGDDPDVTNGAEIHATVRREALNRPGARTMVFVTGGRGVGTITKPGLAVPVGE
HEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCC
PAINPVPMRMITEAVKAEFSVVCLPQILTVTVSIPNGEELAKKTLNARLGIVGGLSILGT
CCCCCCCHHHHHHHHHHCCEEEEECEEEEEEEECCCHHHHHHHHHHHHHHHEECHHHHCC
TGIVRPISAKAWTDTLDAAIDVALACGCRTLVLSTGRTSELVVQGALAGEHLREEACVMM
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHEEEHHHHHHHHHHHHHHHH
GDHVGYALRACARKGAEQAVLAGQFAKLLKIACGHEQTHVSSSELDLRLLAEWIAATPAA
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCHH
SHLASLVEGANTARQVLEASGNDPALMELVCSRAREAARLLAPSLRIKVLLAGYDSTVLY
HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEE
FG
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA