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The map label for this gene is ycbZ [H]

Identifier: 39997528

GI number: 39997528

Start: 2667497

End: 2669962

Strand: Reverse

Name: ycbZ [H]

Synonym: GSU2433

Alternate gene names: 39997528

Gene position: 2669962-2667497 (Counterclockwise)

Preceding gene: 39997529

Following gene: 39997527

Centisome position: 70.0

GC content: 63.99

Gene sequence:

>2466_bases
GTGTCCACTGACCGTCTGAAACTCCCCGTCGAGAAGCTCCGCTGGATCTGCGATCCAGATCAGTTCGAATTCACCACCAC
CGATGATCTGCCCGAGCTGGAGGGGACCCTCGGCCAGGCCCGGGCCCTGGCATCCATCGATTTCGGCCTCGGCATCCGCG
AGAGCGGGTTCAACCTGTTCCTGGCCGGGGAGCCCGGCACCGGCCGCAGCTCCACCGTCAAGAACATCCTGAAGAAACGG
GCAAAGGGCGAGCCGACCCCCTCGGACTGGGTCTACGTCAACAACTTCAAGACGCCGGACCTCCCCATCGCCCTGGCGCT
GCCGGCGGGCAAGGGGAGCGAGCTGGAGCAGGACATGCGGGAGCTGATCTCCGCGGTCCGTTCGGTCATCCCCAAGGCCC
TGGACAGCAAGGAGTACGAGACCAACAAGGCAACCATTGTCGAGTCGTACCAGGAGCACAATAACGAGCTCTTTTCGACC
CTGGAGACCGAGGCCCAGGACAAGGGGTTCGCGCTCCAGCGGACCGTGTCGGGGCTGGTGATGGTTCCCCAGAAGGAGGA
CCGCAACTTCACCCAGGAGGAGTACGAGGCCCTGCCGGAGGAGGAGAAGGAGCGGATCAGCCAGATCGGGCAGGAGCTGA
CCGACAAGCTGAACGACGTGCTCCGCCAGGTGCGCGAGAACGAGAAGCAGACCAAGGACGCCCTGGCCCAGCTGGACCGC
GACCTGGGCAACGCCACGGTGGGGCATCACCTGGACCCCCTGCGGGAGAAGTACGGCGACAACCCCGCGGTGGTGGAGTA
CCTGAACGCGGTGCAGGAGGACATCATCGCCAACCTTGAGGACTTCAAGCCCCAGCAGCCGGTTCAGTCTCCCATTCCGG
GGCTCAAGCTCCCCCGCCAGGAGCCCTCCTTCGAGCGCTACCAGGTGAATGTCTTCGTGGACAACCATGAGACCGAGGGG
GCGCCGGTGGTGTTCGAGCCCAACCCCACCTACAACAACCTGTTCGGCCGCATCGAGCACGTGATGCAGATGGGGGGCAT
GGCCACCACCAACTTCACCCTCATCAAGCCGGGGGCGCTCCACCGGGCCAACGGCGGCTACCTGATCGTGGATGCCCGGG
AAGTTCTGATGAACCCCTTCTCCTGGGATTCCCTCAAGCGCTGCATCCGCAACGCCGAGATCAAGATCGAGGACCCCCTG
GAGCAGTACCGCTTCATCACCACGGTTTCCATGAAGCCCGAGTCGGTCCCCCTGCAGGCCAAGATCATCATGATCGGGTC
GCCGTGGATCTACTACCTCCTCTTCCACCTGGAGCCCGACTACCGCAAGTTCTTCAAGGTGAAGGCCGATTTCGACAGCC
GCATCGCCCGCACGTCCGAGGTGATCAAGGACTATGCTCTGTTCGTGGCCACCCACTGCAAGAACGAGAAGCTGCTCCCC
TTCGACCGGAGCGGCGTGGCCGGGCTCATCGAGTACTCGGCCCGGCTGGTGGAGGACCAGAACAAGCTCTCATCGCAGTT
CATGGAGATCGCCGACCTGATCCGCGAGGCGAGTTACTGGGCCGGCAAGGACGGCAGCCAGGTGGTTGATCATGGCCACG
TGACCCGCGCCATCGAGCAGAAGATCTACCGGAGTAACCGGATCGAGGAGCGGATGCAGGAGCTCTTCGACGATGGGACC
ATCATGGTGGACACCGACGGCGCGGCAGTGGGGCAGATCAACGGCCTGGCGGTCATGACCGTGGGGGATCACACCTTCGG
CCGCCCGTCCCGGGTCACGTCCCGGGTCTGGCTGGGGCGGGCCGGCATGGTCAACATCGAGCGCGAGGTGAAGCTCTCGG
GCCCCATCCACGACAAGGGGGTCCTGATCCTCACCGGCTACCTGGGCGGGAAGTTCGCCCATGACAAGCCCCTCTCTTTT
TCCGCCTCCATCTGCTTCGAGCAGAACTACGAAGGGGTCGAGGGAGACAGCGCCTCGTCCACGGAACTCTACTGCCTCCT
CTCGGCCTTCTCGGGTGTTCCCATCAAACAGGGAATCGCCGTGACCGGCAGCGTCAACCAGCACGGCATGGTCCAGCCCA
TCGGCGGCGTAAACTACAAGATCGAGGGCTTTTACGCCGTCTGCAAGTCCCGTGGGCTCACCGGCGACCAGGGGGTCATG
ATCCCCGCGTCCAACGAGCGGCACCTGATGCTGAGCGACGAGGTGGTGCAGGCGGTGCGTGAGGGGAAATTCCACATCTG
GAGCGTATCCACCATTGACGAGGGGATCGAGATCCTGACCGGCGTTCCGGCCGGCGCCCTGCAGGAGGACGGCAGCTACC
CGGAGGGGACCGTCAACTTCCTGGTGGATCGCCGGCTGCGGGAAATGATCGAGAGCATGAAGAAATTCGGCTCGTCCGGC
GAGAAAGACGAGAAGAAGGAGTCCGGGGCTCCCGCGCCCGCCCTCGAGGGGGGGCAATCGTCATGA

Upstream 100 bases:

>100_bases
GGCTGCCGGCCGACGCCCTGCCGGAGCAGCCCCGTGATGCCGTTCAACCTTCGTCATGCGATGATGTTCATGCACCGTCA
ACCACTTCAAGGAGGCCACC

Downstream 100 bases:

>100_bases
GAGGGCTTGCCCCGGTGGCCGCCTGCATGGCCCTGGCCCTGGCGGCCGGCTGCAGCGGCGGGTCCGGCGCTGGAGGCGGC
GAGCTGTTCGCCACCCACTG

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 821; Mature: 820

Protein sequence:

>821_residues
MSTDRLKLPVEKLRWICDPDQFEFTTTDDLPELEGTLGQARALASIDFGLGIRESGFNLFLAGEPGTGRSSTVKNILKKR
AKGEPTPSDWVYVNNFKTPDLPIALALPAGKGSELEQDMRELISAVRSVIPKALDSKEYETNKATIVESYQEHNNELFST
LETEAQDKGFALQRTVSGLVMVPQKEDRNFTQEEYEALPEEEKERISQIGQELTDKLNDVLRQVRENEKQTKDALAQLDR
DLGNATVGHHLDPLREKYGDNPAVVEYLNAVQEDIIANLEDFKPQQPVQSPIPGLKLPRQEPSFERYQVNVFVDNHETEG
APVVFEPNPTYNNLFGRIEHVMQMGGMATTNFTLIKPGALHRANGGYLIVDAREVLMNPFSWDSLKRCIRNAEIKIEDPL
EQYRFITTVSMKPESVPLQAKIIMIGSPWIYYLLFHLEPDYRKFFKVKADFDSRIARTSEVIKDYALFVATHCKNEKLLP
FDRSGVAGLIEYSARLVEDQNKLSSQFMEIADLIREASYWAGKDGSQVVDHGHVTRAIEQKIYRSNRIEERMQELFDDGT
IMVDTDGAAVGQINGLAVMTVGDHTFGRPSRVTSRVWLGRAGMVNIEREVKLSGPIHDKGVLILTGYLGGKFAHDKPLSF
SASICFEQNYEGVEGDSASSTELYCLLSAFSGVPIKQGIAVTGSVNQHGMVQPIGGVNYKIEGFYAVCKSRGLTGDQGVM
IPASNERHLMLSDEVVQAVREGKFHIWSVSTIDEGIEILTGVPAGALQEDGSYPEGTVNFLVDRRLREMIESMKKFGSSG
EKDEKKESGAPAPALEGGQSS

Sequences:

>Translated_821_residues
MSTDRLKLPVEKLRWICDPDQFEFTTTDDLPELEGTLGQARALASIDFGLGIRESGFNLFLAGEPGTGRSSTVKNILKKR
AKGEPTPSDWVYVNNFKTPDLPIALALPAGKGSELEQDMRELISAVRSVIPKALDSKEYETNKATIVESYQEHNNELFST
LETEAQDKGFALQRTVSGLVMVPQKEDRNFTQEEYEALPEEEKERISQIGQELTDKLNDVLRQVRENEKQTKDALAQLDR
DLGNATVGHHLDPLREKYGDNPAVVEYLNAVQEDIIANLEDFKPQQPVQSPIPGLKLPRQEPSFERYQVNVFVDNHETEG
APVVFEPNPTYNNLFGRIEHVMQMGGMATTNFTLIKPGALHRANGGYLIVDAREVLMNPFSWDSLKRCIRNAEIKIEDPL
EQYRFITTVSMKPESVPLQAKIIMIGSPWIYYLLFHLEPDYRKFFKVKADFDSRIARTSEVIKDYALFVATHCKNEKLLP
FDRSGVAGLIEYSARLVEDQNKLSSQFMEIADLIREASYWAGKDGSQVVDHGHVTRAIEQKIYRSNRIEERMQELFDDGT
IMVDTDGAAVGQINGLAVMTVGDHTFGRPSRVTSRVWLGRAGMVNIEREVKLSGPIHDKGVLILTGYLGGKFAHDKPLSF
SASICFEQNYEGVEGDSASSTELYCLLSAFSGVPIKQGIAVTGSVNQHGMVQPIGGVNYKIEGFYAVCKSRGLTGDQGVM
IPASNERHLMLSDEVVQAVREGKFHIWSVSTIDEGIEILTGVPAGALQEDGSYPEGTVNFLVDRRLREMIESMKKFGSSG
EKDEKKESGAPAPALEGGQSS
>Mature_820_residues
STDRLKLPVEKLRWICDPDQFEFTTTDDLPELEGTLGQARALASIDFGLGIRESGFNLFLAGEPGTGRSSTVKNILKKRA
KGEPTPSDWVYVNNFKTPDLPIALALPAGKGSELEQDMRELISAVRSVIPKALDSKEYETNKATIVESYQEHNNELFSTL
ETEAQDKGFALQRTVSGLVMVPQKEDRNFTQEEYEALPEEEKERISQIGQELTDKLNDVLRQVRENEKQTKDALAQLDRD
LGNATVGHHLDPLREKYGDNPAVVEYLNAVQEDIIANLEDFKPQQPVQSPIPGLKLPRQEPSFERYQVNVFVDNHETEGA
PVVFEPNPTYNNLFGRIEHVMQMGGMATTNFTLIKPGALHRANGGYLIVDAREVLMNPFSWDSLKRCIRNAEIKIEDPLE
QYRFITTVSMKPESVPLQAKIIMIGSPWIYYLLFHLEPDYRKFFKVKADFDSRIARTSEVIKDYALFVATHCKNEKLLPF
DRSGVAGLIEYSARLVEDQNKLSSQFMEIADLIREASYWAGKDGSQVVDHGHVTRAIEQKIYRSNRIEERMQELFDDGTI
MVDTDGAAVGQINGLAVMTVGDHTFGRPSRVTSRVWLGRAGMVNIEREVKLSGPIHDKGVLILTGYLGGKFAHDKPLSFS
ASICFEQNYEGVEGDSASSTELYCLLSAFSGVPIKQGIAVTGSVNQHGMVQPIGGVNYKIEGFYAVCKSRGLTGDQGVMI
PASNERHLMLSDEVVQAVREGKFHIWSVSTIDEGIEILTGVPAGALQEDGSYPEGTVNFLVDRRLREMIESMKKFGSSGE
KDEKKESGAPAPALEGGQSS

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=418, Percent_Identity=33.7320574162679, Blast_Score=244, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 91442; Mature: 91311

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDRLKLPVEKLRWICDPDQFEFTTTDDLPELEGTLGQARALASIDFGLGIRESGFNLF
CCCCCCCCCHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEE
LAGEPGTGRSSTVKNILKKRAKGEPTPSDWVYVNNFKTPDLPIALALPAGKGSELEQDMR
EECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHH
ELISAVRSVIPKALDSKEYETNKATIVESYQEHNNELFSTLETEAQDKGFALQRTVSGLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEE
MVPQKEDRNFTQEEYEALPEEEKERISQIGQELTDKLNDVLRQVRENEKQTKDALAQLDR
EECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGNATVGHHLDPLREKYGDNPAVVEYLNAVQEDIIANLEDFKPQQPVQSPIPGLKLPRQ
HHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCC
EPSFERYQVNVFVDNHETEGAPVVFEPNPTYNNLFGRIEHVMQMGGMATTNFTLIKPGAL
CCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
HRANGGYLIVDAREVLMNPFSWDSLKRCIRNAEIKIEDPLEQYRFITTVSMKPESVPLQA
EECCCCEEEEECHHHHCCCCCHHHHHHHHHCCCEEEECCHHHCEEEEEEECCCCCCCCEE
KIIMIGSPWIYYLLFHLEPDYRKFFKVKADFDSRIARTSEVIKDYALFVATHCKNEKLLP
EEEEEECCHHEEEEEEECCCHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FDRSGVAGLIEYSARLVEDQNKLSSQFMEIADLIREASYWAGKDGSQVVDHGHVTRAIEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KIYRSNRIEERMQELFDDGTIMVDTDGAAVGQINGLAVMTVGDHTFGRPSRVTSRVWLGR
HHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHCCC
AGMVNIEREVKLSGPIHDKGVLILTGYLGGKFAHDKPLSFSASICFEQNYEGVEGDSASS
CCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
TELYCLLSAFSGVPIKQGIAVTGSVNQHGMVQPIGGVNYKIEGFYAVCKSRGLTGDQGVM
CHHEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCEE
IPASNERHLMLSDEVVQAVREGKFHIWSVSTIDEGIEILTGVPAGALQEDGSYPEGTVNF
EECCCCCEEEECHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LVDRRLREMIESMKKFGSSGEKDEKKESGAPAPALEGGQSS
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
STDRLKLPVEKLRWICDPDQFEFTTTDDLPELEGTLGQARALASIDFGLGIRESGFNLF
CCCCCCCCHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEE
LAGEPGTGRSSTVKNILKKRAKGEPTPSDWVYVNNFKTPDLPIALALPAGKGSELEQDMR
EECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHHHH
ELISAVRSVIPKALDSKEYETNKATIVESYQEHNNELFSTLETEAQDKGFALQRTVSGLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEE
MVPQKEDRNFTQEEYEALPEEEKERISQIGQELTDKLNDVLRQVRENEKQTKDALAQLDR
EECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGNATVGHHLDPLREKYGDNPAVVEYLNAVQEDIIANLEDFKPQQPVQSPIPGLKLPRQ
HHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCC
EPSFERYQVNVFVDNHETEGAPVVFEPNPTYNNLFGRIEHVMQMGGMATTNFTLIKPGAL
CCCCCEEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
HRANGGYLIVDAREVLMNPFSWDSLKRCIRNAEIKIEDPLEQYRFITTVSMKPESVPLQA
EECCCCEEEEECHHHHCCCCCHHHHHHHHHCCCEEEECCHHHCEEEEEEECCCCCCCCEE
KIIMIGSPWIYYLLFHLEPDYRKFFKVKADFDSRIARTSEVIKDYALFVATHCKNEKLLP
EEEEEECCHHEEEEEEECCCHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FDRSGVAGLIEYSARLVEDQNKLSSQFMEIADLIREASYWAGKDGSQVVDHGHVTRAIEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KIYRSNRIEERMQELFDDGTIMVDTDGAAVGQINGLAVMTVGDHTFGRPSRVTSRVWLGR
HHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHCCC
AGMVNIEREVKLSGPIHDKGVLILTGYLGGKFAHDKPLSFSASICFEQNYEGVEGDSASS
CCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
TELYCLLSAFSGVPIKQGIAVTGSVNQHGMVQPIGGVNYKIEGFYAVCKSRGLTGDQGVM
CHHEEEEHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCEE
IPASNERHLMLSDEVVQAVREGKFHIWSVSTIDEGIEILTGVPAGALQEDGSYPEGTVNF
EECCCCCEEEECHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
LVDRRLREMIESMKKFGSSGEKDEKKESGAPAPALEGGQSS
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]