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The map label for this gene is ybbK [C]

Identifier: 39997525

GI number: 39997525

Start: 2664995

End: 2665780

Strand: Reverse

Name: ybbK [C]

Synonym: GSU2430

Alternate gene names: 39997525

Gene position: 2665780-2664995 (Counterclockwise)

Preceding gene: 39997526

Following gene: 39997523

Centisome position: 69.89

GC content: 63.99

Gene sequence:

>786_bases
ATGTTCGATATTTTCAACTATGTGCCGTTCATGTTCCTCATTGTCCTGCTGATCATGTTCGTGGCCAGCGCCGTGAGGAT
TCTCCCCGAGTACGAGCGGGGGGTGCTGTTCCGGCTCGGTCGCCTGGCCGGGGCGCGGGGGCCGGGGCTGTTCTTCATCA
TCCCGGGGGTCGACAAGCTGGTGCGGGTGTCCCTGCGGACCGTGGCCCTGGATGTGCCCCCCCAGGACGTCATCACCCAC
GACAACGTGACCGTCAAGGTGTCTGCGGTCATCTATTTCCGGGTCATGGAGCCCCAGAAGGCCATCGTGGAGGTGGAGAA
CTACCTGTACGCCACCAGCCAGCTGGCCCAGACCACCCTGCGGAGCGTCCTGGGGCAGGTGGAGCTGGACGAGCTCCTGG
CCAACCGGGAAAAGATCAACAAGGAGCTCCAGGAGATTCTGGACCGCCACACGGGGCCCTGGGGAGTCAAGGTGACCGCC
GTGGAGGTGAAGAACATCGACCTCCCCCAGGAGATGCTCCGGGCCATTGCCAAGCAGGCCGAGGCCGAGCGGGAGCGGCG
GGCCAAGATCATCCATGCCGACGGCGAGTACCAGGCATCGGAAAAGCTGGCCCAGGCGGCAAAGGTGCTGGCCGCCGAGC
CCACCTCGCTCCAGCTCCGCTATCTCCAGACCCTCACCGAGGTGGCCGCGGAGAAGAACTCCACCACCATCTTCCCGGTC
CCCATCGACCTCATCAAGATGTTCATGGACAGGATCGGGACGGACAAGGACGCACCGAAGTCCTGA

Upstream 100 bases:

>100_bases
AAAAGTTATCGTAGGGGCGATCCTTGCGATCGCCCATTTCCAGACGGATGCAATCATGGGCGAAGAGACGAATTCGCCCC
CACGTAAGGGAGGTTTCCCC

Downstream 100 bases:

>100_bases
TGTTCCGGGGTGCAGATATAAAAAAAGGCCCGTCGCTGTGGACGGGCCTTTTTTCGTGCTGCGCAAGCCGTGAACCGGTG
AGGGCTACTTGGCCATCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MFDIFNYVPFMFLIVLLIMFVASAVRILPEYERGVLFRLGRLAGARGPGLFFIIPGVDKLVRVSLRTVALDVPPQDVITH
DNVTVKVSAVIYFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKIIHADGEYQASEKLAQAAKVLAAEPTSLQLRYLQTLTEVAAEKNSTTIFPV
PIDLIKMFMDRIGTDKDAPKS

Sequences:

>Translated_261_residues
MFDIFNYVPFMFLIVLLIMFVASAVRILPEYERGVLFRLGRLAGARGPGLFFIIPGVDKLVRVSLRTVALDVPPQDVITH
DNVTVKVSAVIYFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKIIHADGEYQASEKLAQAAKVLAAEPTSLQLRYLQTLTEVAAEKNSTTIFPV
PIDLIKMFMDRIGTDKDAPKS
>Mature_261_residues
MFDIFNYVPFMFLIVLLIMFVASAVRILPEYERGVLFRLGRLAGARGPGLFFIIPGVDKLVRVSLRTVALDVPPQDVITH
DNVTVKVSAVIYFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKIIHADGEYQASEKLAQAAKVLAAEPTSLQLRYLQTLTEVAAEKNSTTIFPV
PIDLIKMFMDRIGTDKDAPKS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=239, Percent_Identity=47.6987447698745, Blast_Score=226, Evalue=2e-59,
Organism=Homo sapiens, GI221316744, Length=239, Percent_Identity=45.1882845188285, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI21686995, Length=239, Percent_Identity=45.1882845188285, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI7657615, Length=243, Percent_Identity=34.5679012345679, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI7305503, Length=193, Percent_Identity=35.7512953367876, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI20149563, Length=161, Percent_Identity=32.9192546583851, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI38016907, Length=58, Percent_Identity=56.8965517241379, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786697, Length=194, Percent_Identity=36.5979381443299, Blast_Score=144, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI25153583, Length=260, Percent_Identity=47.3076923076923, Blast_Score=231, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=48.4, Blast_Score=231, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=48.4, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17569499, Length=248, Percent_Identity=48.3870967741936, Blast_Score=223, Evalue=9e-59,
Organism=Caenorhabditis elegans, GI17570459, Length=255, Percent_Identity=44.3137254901961, Blast_Score=219, Evalue=8e-58,
Organism=Caenorhabditis elegans, GI193210507, Length=254, Percent_Identity=47.244094488189, Blast_Score=218, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17570161, Length=254, Percent_Identity=47.244094488189, Blast_Score=218, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17569493, Length=246, Percent_Identity=44.7154471544715, Blast_Score=211, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI193209764, Length=246, Percent_Identity=44.7154471544715, Blast_Score=210, Evalue=6e-55,
Organism=Caenorhabditis elegans, GI71989948, Length=230, Percent_Identity=47.8260869565217, Blast_Score=208, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=239, Percent_Identity=43.5146443514644, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI32566490, Length=211, Percent_Identity=50.2369668246445, Blast_Score=194, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=49.4444444444444, Blast_Score=161, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI32564147, Length=196, Percent_Identity=34.1836734693878, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=49.1525423728814, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17542664, Length=166, Percent_Identity=26.5060240963855, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45556022, Length=243, Percent_Identity=51.0288065843621, Blast_Score=235, Evalue=2e-62,
Organism=Drosophila melanogaster, GI62484448, Length=248, Percent_Identity=49.5967741935484, Blast_Score=220, Evalue=7e-58,
Organism=Drosophila melanogaster, GI281365664, Length=248, Percent_Identity=49.5967741935484, Blast_Score=220, Evalue=7e-58,
Organism=Drosophila melanogaster, GI24657857, Length=248, Percent_Identity=49.5967741935484, Blast_Score=220, Evalue=8e-58,
Organism=Drosophila melanogaster, GI18860517, Length=246, Percent_Identity=47.1544715447154, Blast_Score=220, Evalue=9e-58,
Organism=Drosophila melanogaster, GI62484274, Length=248, Percent_Identity=49.5967741935484, Blast_Score=219, Evalue=1e-57,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=41.6666666666667, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=41.6666666666667, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI21356845, Length=244, Percent_Identity=37.7049180327869, Blast_Score=195, Evalue=2e-50,
Organism=Drosophila melanogaster, GI28573263, Length=246, Percent_Identity=39.0243902439024, Blast_Score=191, Evalue=4e-49,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=40.5405405405405, Blast_Score=152, Evalue=3e-37,
Organism=Drosophila melanogaster, GI45550506, Length=204, Percent_Identity=36.2745098039216, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29334; Mature: 29334

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIFNYVPFMFLIVLLIMFVASAVRILPEYERGVLFRLGRLAGARGPGLFFIIPGVDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
VRVSLRTVALDVPPQDVITHDNVTVKVSAVIYFRVMEPQKAIVEVENYLYATSQLAQTTL
HHHHHHHEEECCCCHHHEECCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
RSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTAVEVKNIDLPQEMLRAIAKQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
EAERERRAKIIHADGEYQASEKLAQAAKVLAAEPTSLQLRYLQTLTEVAAEKNSTTIFPV
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
PIDLIKMFMDRIGTDKDAPKS
CHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFDIFNYVPFMFLIVLLIMFVASAVRILPEYERGVLFRLGRLAGARGPGLFFIIPGVDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
VRVSLRTVALDVPPQDVITHDNVTVKVSAVIYFRVMEPQKAIVEVENYLYATSQLAQTTL
HHHHHHHEEECCCCHHHEECCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
RSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTAVEVKNIDLPQEMLRAIAKQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
EAERERRAKIIHADGEYQASEKLAQAAKVLAAEPTSLQLRYLQTLTEVAAEKNSTTIFPV
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
PIDLIKMFMDRIGTDKDAPKS
CHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]