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The map label for this gene is degT [H]

Identifier: 39997360

GI number: 39997360

Start: 2477971

End: 2479062

Strand: Reverse

Name: degT [H]

Synonym: GSU2262

Alternate gene names: 39997360

Gene position: 2479062-2477971 (Counterclockwise)

Preceding gene: 39997361

Following gene: 39997359

Centisome position: 65.0

GC content: 64.1

Gene sequence:

>1092_bases
ATGATTCCAATGGTAGACCTCAAGGTCCAGTACCTGAAACTTAAAGACGAGATCGACCGGGGCATTCTGGAAGCCCTGGA
GAAGACCCAGTTCATCCTCGGTCCCAACGTGAGCGCCTTCGAGGAGGAGGCTGCGGCGTACCTGGGCGTGAAGCACGCCA
TTGGGGTAGCCTCCGGCACCGACGCCCTTCATCTTGCTCTGGCCGCAGCCGGCATCAAGGAGGGTGACGAGGTGATCACC
TCCCCCTTCACCTTCATCGCAACGGCCGAGGCCATTCGCTATGTGGGGGCGACGCCGGTCTTCGTCGACATTGACCCGCG
CACCTACAATATCGATCCGGCAGCCATCGAGGCGGCCATCACCCCCAGGACCCGTGCAGTGCTGCCGGTCCACCTGTTCG
GCCAGCCCGCCGATATGGGGGCCATCGAGGCGATCTGCGCCAAACACGGCCTCCTTCTGGTCGAAGATTGCGCCCAGTCC
TTCGGCGCCGCCGCGGCAGGCCGGATGACCGGTTCCATCGGCGCTCTGGGGGCCTTCAGCTTCTTCCCCAGCAAGAACCT
TGGGTGCTACGGCGACGGGGGCCTCGTGACAACCTCCTGCTCCGAGACGGCCGAGATGGTCAAGGTGCTCCGCAACCACG
GGAGCAAGGTCCGCTATCACCATTCGGTCATCGGCTACAACAGCCGCCTCGACGAGATCCAGGCCGTGATCCTGCGGGCC
AAGCTCAAGCATATCGACGAGTACAACCAGGGACGGCGCCGGGTGGCGCATCTCTACTCGGAACTGCTGGCCGGCACCGG
CATCGTCACCCCCTTCGAGGACGGCAAGGGCGTTCACGTCTACCACCAGTACACACTGCTCACGGACCGGCGCGACGACA
TCATGAAAGCCCTGACCGGGGCGGGCATCGCCTCCGCCATTTACTATCCCATCCCGCTGCACAAGCAGGATGTCTTTGCA
GTACAGTTCGCCGGCCTGACCCTCCCGGTGACCGAGGATGCGGCGGCCCGCTGCATGTCGCTCCCCATCTTCCCCGAGAT
GACCGAGGAGCAGGTGCGCGAGGTGGTCGGGGTCATCAAGAGCGCGCTCTAG

Upstream 100 bases:

>100_bases
AAACAACTGTAGACGCGTTGAAGCGTTAACGGATTGATACCTTTGATCTGATGGTCAAGCACCACGTCCGCGTTTCAATG
CGTATCCAAGGAGGAAGACA

Downstream 100 bases:

>100_bases
CTGCGACACCTGCCACGACACTGAACACGGAGACGCCCTGCGGGGCGTCTCTGCCATTTTTGACGGATGACAGAAAACAC
ATCACATCGAATCATGATCG

Product: pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MIPMVDLKVQYLKLKDEIDRGILEALEKTQFILGPNVSAFEEEAAAYLGVKHAIGVASGTDALHLALAAAGIKEGDEVIT
SPFTFIATAEAIRYVGATPVFVDIDPRTYNIDPAAIEAAITPRTRAVLPVHLFGQPADMGAIEAICAKHGLLLVEDCAQS
FGAAAAGRMTGSIGALGAFSFFPSKNLGCYGDGGLVTTSCSETAEMVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILRA
KLKHIDEYNQGRRRVAHLYSELLAGTGIVTPFEDGKGVHVYHQYTLLTDRRDDIMKALTGAGIASAIYYPIPLHKQDVFA
VQFAGLTLPVTEDAAARCMSLPIFPEMTEEQVREVVGVIKSAL

Sequences:

>Translated_363_residues
MIPMVDLKVQYLKLKDEIDRGILEALEKTQFILGPNVSAFEEEAAAYLGVKHAIGVASGTDALHLALAAAGIKEGDEVIT
SPFTFIATAEAIRYVGATPVFVDIDPRTYNIDPAAIEAAITPRTRAVLPVHLFGQPADMGAIEAICAKHGLLLVEDCAQS
FGAAAAGRMTGSIGALGAFSFFPSKNLGCYGDGGLVTTSCSETAEMVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILRA
KLKHIDEYNQGRRRVAHLYSELLAGTGIVTPFEDGKGVHVYHQYTLLTDRRDDIMKALTGAGIASAIYYPIPLHKQDVFA
VQFAGLTLPVTEDAAARCMSLPIFPEMTEEQVREVVGVIKSAL
>Mature_363_residues
MIPMVDLKVQYLKLKDEIDRGILEALEKTQFILGPNVSAFEEEAAAYLGVKHAIGVASGTDALHLALAAAGIKEGDEVIT
SPFTFIATAEAIRYVGATPVFVDIDPRTYNIDPAAIEAAITPRTRAVLPVHLFGQPADMGAIEAICAKHGLLLVEDCAQS
FGAAAAGRMTGSIGALGAFSFFPSKNLGCYGDGGLVTTSCSETAEMVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILRA
KLKHIDEYNQGRRRVAHLYSELLAGTGIVTPFEDGKGVHVYHQYTLLTDRRDDIMKALTGAGIASAIYYPIPLHKQDVFA
VQFAGLTLPVTEDAAARCMSLPIFPEMTEEQVREVVGVIKSAL

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=363, Percent_Identity=34.7107438016529, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI2367285, Length=321, Percent_Identity=32.7102803738318, Blast_Score=144, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39083; Mature: 39083

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPMVDLKVQYLKLKDEIDRGILEALEKTQFILGPNVSAFEEEAAAYLGVKHAIGVASGT
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
DALHLALAAAGIKEGDEVITSPFTFIATAEAIRYVGATPVFVDIDPRTYNIDPAAIEAAI
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHEEEE
TPRTRAVLPVHLFGQPADMGAIEAICAKHGLLLVEDCAQSFGAAAAGRMTGSIGALGAFS
CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHH
FFPSKNLGCYGDGGLVTTSCSETAEMVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILRA
CCCCCCCCEEECCCEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
KLKHIDEYNQGRRRVAHLYSELLAGTGIVTPFEDGKGVHVYHQYTLLTDRRDDIMKALTG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHC
AGIASAIYYPIPLHKQDVFAVQFAGLTLPVTEDAAARCMSLPIFPEMTEEQVREVVGVIK
CCHHHHEEECCCCCCCCEEEEEECCEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SAL
HCC
>Mature Secondary Structure
MIPMVDLKVQYLKLKDEIDRGILEALEKTQFILGPNVSAFEEEAAAYLGVKHAIGVASGT
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
DALHLALAAAGIKEGDEVITSPFTFIATAEAIRYVGATPVFVDIDPRTYNIDPAAIEAAI
HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHEEEE
TPRTRAVLPVHLFGQPADMGAIEAICAKHGLLLVEDCAQSFGAAAAGRMTGSIGALGAFS
CCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHH
FFPSKNLGCYGDGGLVTTSCSETAEMVKVLRNHGSKVRYHHSVIGYNSRLDEIQAVILRA
CCCCCCCCEEECCCEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHH
KLKHIDEYNQGRRRVAHLYSELLAGTGIVTPFEDGKGVHVYHQYTLLTDRRDDIMKALTG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHC
AGIASAIYYPIPLHKQDVFAVQFAGLTLPVTEDAAARCMSLPIFPEMTEEQVREVVGVIK
CCHHHHEEECCCCCCCCEEEEEECCEEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SAL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]