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The map label for this gene is rpoZ

Identifier: 39997335

GI number: 39997335

Start: 2452823

End: 2453032

Strand: Reverse

Name: rpoZ

Synonym: GSU2237

Alternate gene names: 39997335

Gene position: 2453032-2452823 (Counterclockwise)

Preceding gene: 39997336

Following gene: 39997334

Centisome position: 64.31

GC content: 58.1

Gene sequence:

>210_bases
ATGGCACGAGTAACCGTTGAGGATTGCCTGGACAAGGTTGATAACCGGTTCCTGCTTGTCATGCTGGCGTCCAAGCGCGT
CAAGCAGCTGTACAAGGGGGCACGTCCGCTCATCGATAACCGGGGCGCCAACAAGAATGTGGTGATCTCCCTGCGCGAAA
TCGCCGCCGGCAAGGTCGGATACGAACTGACCAGTCGTCGTTCCCGCTAA

Upstream 100 bases:

>100_bases
AGATTTTTTCCATGGATTGAGTGACCCCGTTGCGGGTCGGATTTTACACACGTTACCGTCCCCGTCGCCAGCGGGTGCCG
GTTGCACGAAAGGAGTAATA

Downstream 100 bases:

>100_bases
TCACAGGACCTCCCAAGGGCAGAAGCACCAGGCTTCCGCCCTTTTTTTGTCTTTTCCCCATGATACGGCTCAACGATATC
CTCGATAAGGTCGTCACCTA

Product: DNA-directed RNA polymerase, subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVGYELTSRRSR

Sequences:

>Translated_69_residues
MARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVGYELTSRRSR
>Mature_68_residues
ARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVGYELTSRRSR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_GEOSL (Q74AW2)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_953286.1
- GeneID:   2687512
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU2237
- NMPDR:   fig|243231.1.peg.2224
- TIGR:   GSU2237
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- ProtClustDB:   PRK00392
- BioCyc:   GSUL243231:GSU_2237-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7804; Mature: 7673

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVG
CCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHCCCCC
YELTSRRSR
HHHHCCCCC
>Mature Secondary Structure 
ARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVG
CCCCHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHCCCCC
YELTSRRSR
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA