Click here to switch to the map view.

The map label for this gene is ywqM [H]

Identifier: 39997300

GI number: 39997300

Start: 2416007

End: 2416930

Strand: Reverse

Name: ywqM [H]

Synonym: GSU2202

Alternate gene names: 39997300

Gene position: 2416930-2416007 (Counterclockwise)

Preceding gene: 39997305

Following gene: 39997296

Centisome position: 63.37

GC content: 59.09

Gene sequence:

>924_bases
ATGGAGACGCTGTATCTCAAAACGCTCATCGTGACGGCTGAGAAAGGAAGTTTTTCCAAGGCCGCTGCAGAGCTGTGCAT
CACCCAATCTGCGGTGTCGCAACGGGTCAAGTTCCTCGAGGAGCGTTACGGCTGCGAGTTGCTGGATCGCTCGGGTCCTG
TCATGATGCTCACCGCTGCAGGTGAGGCCGTGGTACGGAAGGCCCAGGCCATCCTCGACATCGAGAAGACACTGCAGGAC
GAACTCAAGAAATTTACCGGAAGGCAGCGCCTTTCCATCTGCTGTACGCCATCGTTCGGCATCGCCCACATGCCCAAGGT
TCTCAACCGGTTCATGCTGCGCAACGCCGATATCGTCGATCTCAAGTTCATGTTCTACAGCCCGGAGCAGGCGGTAAAGG
GGCTGGCCGAACGGGAGTTCGATATCGGTATCATAGAGCACTGCGAAGACTTGGACCTGGCCGATTTCCATACTGCGACC
CTGCCGCGGGACGAACTGGTCTTCGTGAGCGCGCCGTCTCTCGGCATCCCCACTCCGCTCGTGACGATCGAGCGGCTCTT
CGAGGAACGCCTCATCACGCGCAAGGACGGCTGCAGTTCCAAGAAACTGCTCAGGCTCAATCTTGCCTCCATCGGCAAGG
ACCTGGAGGGGTTCCGGAGCACCGTGGTCTATGACGATCTGCATCTCACGGTCGATACGGTCCTTGACGGGGGAGGGGTG
GCGTTCGTTTCCTCCTGTCTGGTGAATAAATATCTGGAAAACGGCCAGCTGAAGCAGCACAGAGTCGAGGGATTCTGCCA
CAGCCGCCAGCGGACGGTCGCCCTGAGCAGGAGCAAGGTGCAGGATCGGCTGGTCAGCGACTTCCTGGCGTGCCTGGACA
CGGTGTTTACCGACCAGTGTCACCGAAGTTCCTGCCCCACCTGA

Upstream 100 bases:

>100_bases
GCAGTTCTAATGCGGCTTCAGCGGCGGCATCGATAATTTTATTTATGATGGGTCGTTATCTAGAGGATGGTTGGGGAAGT
TTCTTTCGGGAAGGTTTGGT

Downstream 100 bases:

>100_bases
AAGAAGTGTGCGTGCATGACGGACCGGAGCCCGTTGCCCCTGCGGCAGCGGGCTTTTTTGTACCCTGACGGCGGGCACAA
AAAAAGGAGGTGGACTGGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
METLYLKTLIVTAEKGSFSKAAAELCITQSAVSQRVKFLEERYGCELLDRSGPVMMLTAAGEAVVRKAQAILDIEKTLQD
ELKKFTGRQRLSICCTPSFGIAHMPKVLNRFMLRNADIVDLKFMFYSPEQAVKGLAEREFDIGIIEHCEDLDLADFHTAT
LPRDELVFVSAPSLGIPTPLVTIERLFEERLITRKDGCSSKKLLRLNLASIGKDLEGFRSTVVYDDLHLTVDTVLDGGGV
AFVSSCLVNKYLENGQLKQHRVEGFCHSRQRTVALSRSKVQDRLVSDFLACLDTVFTDQCHRSSCPT

Sequences:

>Translated_307_residues
METLYLKTLIVTAEKGSFSKAAAELCITQSAVSQRVKFLEERYGCELLDRSGPVMMLTAAGEAVVRKAQAILDIEKTLQD
ELKKFTGRQRLSICCTPSFGIAHMPKVLNRFMLRNADIVDLKFMFYSPEQAVKGLAEREFDIGIIEHCEDLDLADFHTAT
LPRDELVFVSAPSLGIPTPLVTIERLFEERLITRKDGCSSKKLLRLNLASIGKDLEGFRSTVVYDDLHLTVDTVLDGGGV
AFVSSCLVNKYLENGQLKQHRVEGFCHSRQRTVALSRSKVQDRLVSDFLACLDTVFTDQCHRSSCPT
>Mature_307_residues
METLYLKTLIVTAEKGSFSKAAAELCITQSAVSQRVKFLEERYGCELLDRSGPVMMLTAAGEAVVRKAQAILDIEKTLQD
ELKKFTGRQRLSICCTPSFGIAHMPKVLNRFMLRNADIVDLKFMFYSPEQAVKGLAEREFDIGIIEHCEDLDLADFHTAT
LPRDELVFVSAPSLGIPTPLVTIERLFEERLITRKDGCSSKKLLRLNLASIGKDLEGFRSTVVYDDLHLTVDTVLDGGGV
AFVSSCLVNKYLENGQLKQHRVEGFCHSRQRTVALSRSKVQDRLVSDFLACLDTVFTDQCHRSSCPT

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=259, Percent_Identity=28.957528957529, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788887, Length=149, Percent_Identity=30.8724832214765, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34302; Mature: 34302

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLYLKTLIVTAEKGSFSKAAAELCITQSAVSQRVKFLEERYGCELLDRSGPVMMLTAA
CCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECC
GEAVVRKAQAILDIEKTLQDELKKFTGRQRLSICCTPSFGIAHMPKVLNRFMLRNADIVD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
LKFMFYSPEQAVKGLAEREFDIGIIEHCEDLDLADFHTATLPRDELVFVSAPSLGIPTPL
EEEEEECHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCHH
VTIERLFEERLITRKDGCSSKKLLRLNLASIGKDLEGFRSTVVYDDLHLTVDTVLDGGGV
HHHHHHHHHHHHHCCCCCCCCHHHEEEHHHHCCHHHHHHHHHEECHHEEEEEHHCCCCCH
AFVSSCLVNKYLENGQLKQHRVEGFCHSRQRTVALSRSKVQDRLVSDFLACLDTVFTDQC
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRSSCPT
HCCCCCC
>Mature Secondary Structure
METLYLKTLIVTAEKGSFSKAAAELCITQSAVSQRVKFLEERYGCELLDRSGPVMMLTAA
CCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECC
GEAVVRKAQAILDIEKTLQDELKKFTGRQRLSICCTPSFGIAHMPKVLNRFMLRNADIVD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
LKFMFYSPEQAVKGLAEREFDIGIIEHCEDLDLADFHTATLPRDELVFVSAPSLGIPTPL
EEEEEECHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCHH
VTIERLFEERLITRKDGCSSKKLLRLNLASIGKDLEGFRSTVVYDDLHLTVDTVLDGGGV
HHHHHHHHHHHHHCCCCCCCCHHHEEEHHHHCCHHHHHHHHHEECHHEEEEEHHCCCCCH
AFVSSCLVNKYLENGQLKQHRVEGFCHSRQRTVALSRSKVQDRLVSDFLACLDTVFTDQC
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRSSCPT
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]