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The map label for this gene is yqeN [H]

Identifier: 39997305

GI number: 39997305

Start: 2421378

End: 2422391

Strand: Reverse

Name: yqeN [H]

Synonym: GSU2207

Alternate gene names: 39997305

Gene position: 2422391-2421378 (Counterclockwise)

Preceding gene: 39997306

Following gene: 39997300

Centisome position: 63.51

GC content: 60.65

Gene sequence:

>1014_bases
ATGAAATCCGACGAACTGGATAACGCCATTGAAAGGGGGGAGATTGCCCCCCTTTACTATTTTTACGGAGACGAGCCCTA
TCTGATGGAGCGGGCCGTCAAGCGTCTCACGGAACGGGTCGTGTCGGCGGATTTCCGCGATTTCAACCTGGACGTATTCT
ACGGCAACGAGAGCAAGGGGGATGATATCGCCACTGCCGCCCAGACCCTGCCCATGTTCGCCGACCGCCGCATGGTGCTC
GTCAAGCGGGCCGGCGATCTGTCGGCCGCTGCTCTCGAAACCCTTGCCGCCTGCGTTGCCGATCCCGCTCCCCAGACCTG
TCTCCTCTTTGTGGGCGACAAGATCGACAAGCGGAAGAAGTTTTTCCTGGATCTGGCAAAAAAGGGAGAACTGGTCGAGT
TCAAGCGTCCCTACGAGAACCAGCTCGGCGTATTCATCCGTGACGAGGCCCGGAGTCTCGGCAAGCGGATCGACGGCGCT
GCCGTTGAAATGCTCGTCTATCTCGTGGGGAACAATCTGGGGGAACTGGCGACCCAGCTGGAAAAGGTGGCCACCTTTGT
GGGTACGAGGGAGACGCTCACGGTAGAGGATGTGCGGGAAGTGGTATCCGATACCAAGGTGGAAAGCGTTTTCGACCTGG
CCAACGCTCTGGGAGAGCGTGATCTGGGCAAGTCTCTGCGGAGCCTGGCCACTATTTTGCGGGACGGCGAGGCCCCACTC
ATGCTTCTGGCCATGATAGCGCGGCATTTCCGCCAGCTCTGGCGGGTGCGCGAGCTCATGGCCGCCAAGGTCCAGCAACA
GGAGGTCGCCCGCAGAACCGGCATCAATCCCTACTTCCTCAAGGGGGTCATGGATCAGGCCCGCAACTTCACCGTGGCAG
ACCTGCGCCGGGTCTTCGAGGGGCTCTATGCAGCCGATCTCGCCCTCAAGGGAGTCGGTGGCGGCGGAAAACCTTCGCTG
GTCATGGAACGGCTGGTGATGGACGTGTGCGGGATGGGACGGCGGAAGAGGTAA

Upstream 100 bases:

>100_bases
CCTGGTACTTCAGCAGAACAGTGAAGAGCAGGCCATAGCCGTCATCTGCCGCCGCCTGGCGCGCGAACTGACCCTCAGGA
TGTCCGAGAACTTTTGAACC

Downstream 100 bases:

>100_bases
CGCAACGCTTTACAGCAATAAAAAGGGGGCTCCCGACGGAGCCCCCTTTTTGTGTAACTGTTCTGTAGCGGTACGTCTAG
CCGAGGGTGTTGACGAGCTT

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKSDELDNAIERGEIAPLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNESKGDDIATAAQTLPMFADRRMVL
VKRAGDLSAAALETLAACVADPAPQTCLLFVGDKIDKRKKFFLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGA
AVEMLVYLVGNNLGELATQLEKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPL
MLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLKGVMDQARNFTVADLRRVFEGLYAADLALKGVGGGGKPSL
VMERLVMDVCGMGRRKR

Sequences:

>Translated_337_residues
MKSDELDNAIERGEIAPLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNESKGDDIATAAQTLPMFADRRMVL
VKRAGDLSAAALETLAACVADPAPQTCLLFVGDKIDKRKKFFLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGA
AVEMLVYLVGNNLGELATQLEKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPL
MLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLKGVMDQARNFTVADLRRVFEGLYAADLALKGVGGGGKPSL
VMERLVMDVCGMGRRKR
>Mature_337_residues
MKSDELDNAIERGEIAPLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNESKGDDIATAAQTLPMFADRRMVL
VKRAGDLSAAALETLAACVADPAPQTCLLFVGDKIDKRKKFFLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGA
AVEMLVYLVGNNLGELATQLEKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPL
MLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLKGVMDQARNFTVADLRRVFEGLYAADLALKGVGGGGKPSL
VMERLVMDVCGMGRRKR

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 37673; Mature: 37673

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDELDNAIERGEIAPLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNESKG
CCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
DDIATAAQTLPMFADRRMVLVKRAGDLSAAALETLAACVADPAPQTCLLFVGDKIDKRKK
CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FFLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGAAVEMLVYLVGNNLGELATQL
HHHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
EKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPL
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
MLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLKGVMDQARNFTVADLRRVFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
GLYAADLALKGVGGGGKPSLVMERLVMDVCGMGRRKR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKSDELDNAIERGEIAPLYYFYGDEPYLMERAVKRLTERVVSADFRDFNLDVFYGNESKG
CCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
DDIATAAQTLPMFADRRMVLVKRAGDLSAAALETLAACVADPAPQTCLLFVGDKIDKRKK
CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
FFLDLAKKGELVEFKRPYENQLGVFIRDEARSLGKRIDGAAVEMLVYLVGNNLGELATQL
HHHHHHCCCCEEECCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
EKVATFVGTRETLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPL
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
MLLAMIARHFRQLWRVRELMAAKVQQQEVARRTGINPYFLKGVMDQARNFTVADLRRVFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
GLYAADLALKGVGGGGKPSLVMERLVMDVCGMGRRKR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]