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The map label for this gene is cydB [H]

Identifier: 39996741

GI number: 39996741

Start: 1799871

End: 1800899

Strand: Direct

Name: cydB [H]

Synonym: GSU1641

Alternate gene names: 39996741

Gene position: 1799871-1800899 (Clockwise)

Preceding gene: 39996740

Following gene: 39996743

Centisome position: 47.19

GC content: 58.5

Gene sequence:

>1029_bases
ATGGAACTGCAGATTACCTGGTTCGTTCTCTGGGGTGTACTCTGGGCGGTCTATTTCATGCTTGACGGATTTGTACTCGG
CACGGGCATCCTGCACAACGTAATCGCTAAGACCGACGGCGAAAAGCGGGTGCTCATCAACGCCGTGGGACCGGTCTGGG
ACGGCAACGAGGTCTGGCTGCTTACCGCAGGCGGTGCAACTTTTGCCGCATTTCCGACCACCTACGCGCTCATGTTCAGC
TATCTCTACACAGCGCTTCTGCTGTTGCTCTTCTCTCTCATCGTCCGCGGTGTGGCCTTTGAGTTCCGGGGCAAGGTTGA
AAGTGCGACCTGGAAAAAGACCTGGGACGTGGCTATTCAGGTGTCGAGCTTTCTGCCCGCGCTCCTGTTCGGGGTGGCTT
TCGGCAATATCTTCGCCGGCCTTCCCATGGACGCCAACGGCTACCACGGCAGCCTCATTGGTCTGCTAAATCCCTACGGC
CTTCTCACTGGGGTACTCTTCGTGCTCCTTTTCACGGTACACGGAGCCCTCTACCTCTCGGTCAAGTCGGTTGGTGAGCT
TAGTGCCCGGGCGAAGGGCGTTGCCGACAAGGTTTGGCCGGTGCTCCTGGTGGTTGCGGTGGCATTTCTCGCTTACACGA
AATTCGCCACGAAGCTGTACGATAACTATCTGGCCCAGCCGGTTCTGTTCATTGTTCCGCTGCTTGCCGTGGCCGGGCTT
GTCGGCACGCGCCTCTTCTCGGCCAAGGGGGCGACTCTGGCGGCCTTTGCCGCCTCGTGCGTGACAGTCCTCATGGTGGC
TGCGACCGGCGTGGCAGGGCTCTTCCCGAACCTGATCCCGTCGAGCCTCGACCCGGCCTATAGCCTGACCATTTTCAATT
CATCGTCGAGCCCCTATACGCTCAAAATCATGACCGCGGTTGCCCTTATCTTCGTCCCCATCGTTATCGCCTACAAGATC
TGGGTGTACCGGATATTCCGGGCCCCGGTCACTGAGGCAGAAGTTCTTAACGATACACACGCCTACTGA

Upstream 100 bases:

>100_bases
GGTGCCATCGATATCTACTTGCTGGCCAAGTATGCCCGCAAGGGACCTGACGACGATCTTTCCGGAATCATTAAGCCTGC
GACGGTAAAGGGGGCCTAAC

Downstream 100 bases:

>100_bases
TACGTCCTTTCCCGCCTTCCGTTACCGGAAAGAGCCCATTGGGCGAGGGCTCTTTCCGGTAACTGTTCCTTTTCTGTAAT
CCTGTTTTTCCTGATGCAGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MELQITWFVLWGVLWAVYFMLDGFVLGTGILHNVIAKTDGEKRVLINAVGPVWDGNEVWLLTAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVAFEFRGKVESATWKKTWDVAIQVSSFLPALLFGVAFGNIFAGLPMDANGYHGSLIGLLNPYG
LLTGVLFVLLFTVHGALYLSVKSVGELSARAKGVADKVWPVLLVVAVAFLAYTKFATKLYDNYLAQPVLFIVPLLAVAGL
VGTRLFSAKGATLAAFAASCVTVLMVAATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTAVALIFVPIVIAYKI
WVYRIFRAPVTEAEVLNDTHAY

Sequences:

>Translated_342_residues
MELQITWFVLWGVLWAVYFMLDGFVLGTGILHNVIAKTDGEKRVLINAVGPVWDGNEVWLLTAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVAFEFRGKVESATWKKTWDVAIQVSSFLPALLFGVAFGNIFAGLPMDANGYHGSLIGLLNPYG
LLTGVLFVLLFTVHGALYLSVKSVGELSARAKGVADKVWPVLLVVAVAFLAYTKFATKLYDNYLAQPVLFIVPLLAVAGL
VGTRLFSAKGATLAAFAASCVTVLMVAATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTAVALIFVPIVIAYKI
WVYRIFRAPVTEAEVLNDTHAY
>Mature_342_residues
MELQITWFVLWGVLWAVYFMLDGFVLGTGILHNVIAKTDGEKRVLINAVGPVWDGNEVWLLTAGGATFAAFPTTYALMFS
YLYTALLLLLFSLIVRGVAFEFRGKVESATWKKTWDVAIQVSSFLPALLFGVAFGNIFAGLPMDANGYHGSLIGLLNPYG
LLTGVLFVLLFTVHGALYLSVKSVGELSARAKGVADKVWPVLLVVAVAFLAYTKFATKLYDNYLAQPVLFIVPLLAVAGL
VGTRLFSAKGATLAAFAASCVTVLMVAATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYTLKIMTAVALIFVPIVIAYKI
WVYRIFRAPVTEAEVLNDTHAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=35.5795148247978, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787213, Length=374, Percent_Identity=35.0267379679144, Blast_Score=208, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36976; Mature: 36976

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQITWFVLWGVLWAVYFMLDGFVLGTGILHNVIAKTDGEKRVLINAVGPVWDGNEVWL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEE
LTAGGATFAAFPTTYALMFSYLYTALLLLLFSLIVRGVAFEFRGKVESATWKKTWDVAIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEE
VSSFLPALLFGVAFGNIFAGLPMDANGYHGSLIGLLNPYGLLTGVLFVLLFTVHGALYLS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VKSVGELSARAKGVADKVWPVLLVVAVAFLAYTKFATKLYDNYLAQPVLFIVPLLAVAGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTRLFSAKGATLAAFAASCVTVLMVAATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEE
LKIMTAVALIFVPIVIAYKIWVYRIFRAPVTEAEVLNDTHAY
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure
MELQITWFVLWGVLWAVYFMLDGFVLGTGILHNVIAKTDGEKRVLINAVGPVWDGNEVWL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEE
LTAGGATFAAFPTTYALMFSYLYTALLLLLFSLIVRGVAFEFRGKVESATWKKTWDVAIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEE
VSSFLPALLFGVAFGNIFAGLPMDANGYHGSLIGLLNPYGLLTGVLFVLLFTVHGALYLS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VKSVGELSARAKGVADKVWPVLLVVAVAFLAYTKFATKLYDNYLAQPVLFIVPLLAVAGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTRLFSAKGATLAAFAASCVTVLMVAATGVAGLFPNLIPSSLDPAYSLTIFNSSSSPYT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEE
LKIMTAVALIFVPIVIAYKIWVYRIFRAPVTEAEVLNDTHAY
EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]