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The map label for this gene is cydA [H]

Identifier: 39996740

GI number: 39996740

Start: 1798517

End: 1799869

Strand: Direct

Name: cydA [H]

Synonym: GSU1640

Alternate gene names: 39996740

Gene position: 1798517-1799869 (Clockwise)

Preceding gene: 39996739

Following gene: 39996741

Centisome position: 47.15

GC content: 58.24

Gene sequence:

>1353_bases
ATGGACGTACTAACCCTGAGCAGGCTCCAGTTCGCGGCAACGACAATGTTCCACTTCATTTTCGTGCCGCTCACCCTCGG
CCTCTCCGTCCTCACGGCGTACATGGAAACCCGGTACGTGCGTACGGGTGATGAAACCTATCTGAAAATGGCAAAGTTCT
GGGGCAAGCTCTTTCTGATCAACTTTGCCCTCGGCGTGGTCACCGGCATTACCCAGGAGTTCCAGTTCGGTATGAACTGG
GCCGAGTATTCCCGCTACGTGGGTGATATCTTCGGTGCTCCGCTCGCCATCGAGGCCACGGTGGCATTCTTCCTGGAGTC
GGTCTTTATCGGCGTCTGGATCTTCGGGTGGAACAAAGTGTCGAAGGCGACCCATGCGGTTGCCATCTGGCTCGTGGCCA
TCGGTACCAATCTCTCGGCTCTCTGGATTTTGCTGGCCAACGGGTGGATGCAGAAGCCGGTCGGCTACGTGCTGCGCAAC
GGCCGGGCCGAAATGGTCGACTTCCTGGCCGTGGTAACCAATCCCTACGGCATCATCAAATTCGTTCACACGCTGACGTC
CGGTTACATGGTGGCGGCTTTCTTCGTGATGGGGATCTCCGCGTGGCACCTGCTCAGGAAGAACCGTATCGACTTCTTTG
TCCGCTCGTTCAGAATGGCAGCCACCTTCGGCTTCGTCGCCGCCATCCTGGTATTCCTCTCCGGTGACTTCCACGCGGTG
GAAATAGCCAAAACTCAGCCCACCAAGTTCGCTGCCATGGAGTCAGTCTGGGAGACCCAGAAAGGGGTCGGCATGAACCT
GATTCTGCTCCCCGACCCGCAGAATGAGTGCAACGCCGTGGAACGGCTCTGTATTCCGAATATGGTGAGCATGCTCGCCT
TCCACACCCCTGACGCCGAGATCAAGGGGCTCAAGGACTTTCCCAAGGAACTGCGTCCGCCGGTGCAGCCCACCTTCTGG
AGCTTCCGTCTCATGGTTGGCTTGGGTACGTTCATGACACTAGCCGCCCTGGCCGGCGTTATTCTTTCCCGGATGAAGAA
TCTTGAGAACAGGACCCTCTTCCTGCGCGTGATGCTGCTCGCGCTGCCGCTCCCGTACATTGCTGCACAACTGGGCTGGA
TCGTGGCGGAACTGGGCCGTCAGCCCTGGATCGTCTATGGGGTGCTCAAGACGGCCGATGGTGTCTCAAAGGCCGTGACA
ACGCCCCAGGTGGTCGGTTCGCTGGTGGGTTTCACGCTGATTTACAGCCTGCTGGGTGCCATCGATATCTACTTGCTGGC
CAAGTATGCCCGCAAGGGACCTGACGACGATCTTTCCGGAATCATTAAGCCTGCGACGGTAAAGGGGGCCTAA

Upstream 100 bases:

>100_bases
ACTCTTAATAAAACCGCGCCCATTCATGGGCGCTTTACATGTGCAGCGGCTGCAGCCGCATAATCACTCTGAAGTACATA
CTCAAAGGAGGTAACGGCGA

Downstream 100 bases:

>100_bases
CATGGAACTGCAGATTACCTGGTTCGTTCTCTGGGGTGTACTCTGGGCGGTCTATTTCATGCTTGACGGATTTGTACTCG
GCACGGGCATCCTGCACAAC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MDVLTLSRLQFAATTMFHFIFVPLTLGLSVLTAYMETRYVRTGDETYLKMAKFWGKLFLINFALGVVTGITQEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWIFGWNKVSKATHAVAIWLVAIGTNLSALWILLANGWMQKPVGYVLRN
GRAEMVDFLAVVTNPYGIIKFVHTLTSGYMVAAFFVMGISAWHLLRKNRIDFFVRSFRMAATFGFVAAILVFLSGDFHAV
EIAKTQPTKFAAMESVWETQKGVGMNLILLPDPQNECNAVERLCIPNMVSMLAFHTPDAEIKGLKDFPKELRPPVQPTFW
SFRLMVGLGTFMTLAALAGVILSRMKNLENRTLFLRVMLLALPLPYIAAQLGWIVAELGRQPWIVYGVLKTADGVSKAVT
TPQVVGSLVGFTLIYSLLGAIDIYLLAKYARKGPDDDLSGIIKPATVKGA

Sequences:

>Translated_450_residues
MDVLTLSRLQFAATTMFHFIFVPLTLGLSVLTAYMETRYVRTGDETYLKMAKFWGKLFLINFALGVVTGITQEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWIFGWNKVSKATHAVAIWLVAIGTNLSALWILLANGWMQKPVGYVLRN
GRAEMVDFLAVVTNPYGIIKFVHTLTSGYMVAAFFVMGISAWHLLRKNRIDFFVRSFRMAATFGFVAAILVFLSGDFHAV
EIAKTQPTKFAAMESVWETQKGVGMNLILLPDPQNECNAVERLCIPNMVSMLAFHTPDAEIKGLKDFPKELRPPVQPTFW
SFRLMVGLGTFMTLAALAGVILSRMKNLENRTLFLRVMLLALPLPYIAAQLGWIVAELGRQPWIVYGVLKTADGVSKAVT
TPQVVGSLVGFTLIYSLLGAIDIYLLAKYARKGPDDDLSGIIKPATVKGA
>Mature_450_residues
MDVLTLSRLQFAATTMFHFIFVPLTLGLSVLTAYMETRYVRTGDETYLKMAKFWGKLFLINFALGVVTGITQEFQFGMNW
AEYSRYVGDIFGAPLAIEATVAFFLESVFIGVWIFGWNKVSKATHAVAIWLVAIGTNLSALWILLANGWMQKPVGYVLRN
GRAEMVDFLAVVTNPYGIIKFVHTLTSGYMVAAFFVMGISAWHLLRKNRIDFFVRSFRMAATFGFVAAILVFLSGDFHAV
EIAKTQPTKFAAMESVWETQKGVGMNLILLPDPQNECNAVERLCIPNMVSMLAFHTPDAEIKGLKDFPKELRPPVQPTFW
SFRLMVGLGTFMTLAALAGVILSRMKNLENRTLFLRVMLLALPLPYIAAQLGWIVAELGRQPWIVYGVLKTADGVSKAVT
TPQVVGSLVGFTLIYSLLGAIDIYLLAKYARKGPDDDLSGIIKPATVKGA

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=508, Percent_Identity=39.9606299212598, Blast_Score=342, Evalue=2e-95,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=51.5723270440252, Blast_Score=315, Evalue=5e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49964; Mature: 49964

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]