Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 39996614

GI number: 39996614

Start: 1660857

End: 1661948

Strand: Direct

Name: rfaQ [H]

Synonym: GSU1514

Alternate gene names: 39996614

Gene position: 1660857-1661948 (Clockwise)

Preceding gene: 39996613

Following gene: 39996615

Centisome position: 43.54

GC content: 59.89

Gene sequence:

>1092_bases
ATGAATCCCCGGTTGCTCAAACTGATAGATAGTGTGGTGGGACGCACTGCAGCAGCCATCATTCCCCCGCCATCGCTTGT
TCTGCAGCCACACCTCCCCAAGTCCATCCTCGTCATCCGCCCCGGTGGCATCGGCGACGCTGCCCTCCTTGCTCCCGCGC
TGCACGCACTGCAAAGGAGCTACCCCGGTGTCTCCATTGATATTCTGGCCGAACGGCGTAATGCCGGCGCTTTTGCTCTC
TGTCCCGGCCTCCGTTCGGTTAGCCGCTACGACGTTCCCGCTGAGTTTTTTCCCGTGTTGCGTTCAAGCTATGATGTTGT
CATCGATACGGAACAGTGGCACCGGCTTTCGGCGGTAGTGGCCCGAATTGTTCGGGCGGGGATCAAAATCGGCTTTGCGA
CCAATGAGCGCCGTCGTCTCTTCACCCATCCCATACCCTACGAGCAGGATGACTACGAGGCCGACAGCTTCATGCGACTG
TTAACACCGCTCGGCATCAGAGGGGAAGGGGAGGCGGAATGCTCGTTTCTGGCTGTTCCTGCCAGGGATGCCGAACTGGT
CGATCAACTGCTCGGGGGACTGAAGGGGCGGCGATTCGTCGCACTGTTTCCCGGGGCAAGTATTGCGGAGCGGCGTTGGG
GGGCGGAACGCTTCGCGAGTCTTGCTGCGCTGCTGGTACAACGAGGCATCGGCGTCGTTGTGGTCGGAGGTGAGTCCGAG
CGTGCCGCCGGCCGTACTGTGGAGGCGGCCGGCGGTCTGTCTCTGTGCGGAAGGACGGGGCTTGCCGCTACCGCAGCGGT
GATCGGTCGGTCGGCTCTTCTCGTCAGCGGCGATTCGGGTATCCTTCACATTGCCGTCGGTCTCGGCATACCCACAGTCT
CACTTTTTGGCCCCGGCCGGGCGAAGAAGTGGGCGCCTCGCAACGGTTACCATACGGTGATCAACAAGGAGTTGCCCTGT
TCCCCCTGCACCACCTTCGGATACACGCCGAAATGTCCTGGAAATGCGCGCTGCATGGCGGATATCACTGTGGATGAGGT
TAAAGGCGCTGTTCTTGCTGTGCTTGAAAAAATAATATCTCATCCTAAATAA

Upstream 100 bases:

>100_bases
ATATTTGGGCACTTTTGCCGTTTGCTCCTCTCGTCGCTGCAGGTTATCTTAGCGGGTTCAGCGATAATATAACCCTCATA
GCGCGGGCTTGCCGTCATAA

Downstream 100 bases:

>100_bases
AGCCTTGACACCGTTTGAGCTGAGTGGTAAATGATGAAGCTCGTTTTGGTTGGAGGCGCGTAGCTCAGGGGGAGAGCGCT
ACCTTGACACGGTAGAGGTC

Product: heptosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNPRLLKLIDSVVGRTAAAIIPPPSLVLQPHLPKSILVIRPGGIGDAALLAPALHALQRSYPGVSIDILAERRNAGAFAL
CPGLRSVSRYDVPAEFFPVLRSSYDVVIDTEQWHRLSAVVARIVRAGIKIGFATNERRRLFTHPIPYEQDDYEADSFMRL
LTPLGIRGEGEAECSFLAVPARDAELVDQLLGGLKGRRFVALFPGASIAERRWGAERFASLAALLVQRGIGVVVVGGESE
RAAGRTVEAAGGLSLCGRTGLAATAAVIGRSALLVSGDSGILHIAVGLGIPTVSLFGPGRAKKWAPRNGYHTVINKELPC
SPCTTFGYTPKCPGNARCMADITVDEVKGAVLAVLEKIISHPK

Sequences:

>Translated_363_residues
MNPRLLKLIDSVVGRTAAAIIPPPSLVLQPHLPKSILVIRPGGIGDAALLAPALHALQRSYPGVSIDILAERRNAGAFAL
CPGLRSVSRYDVPAEFFPVLRSSYDVVIDTEQWHRLSAVVARIVRAGIKIGFATNERRRLFTHPIPYEQDDYEADSFMRL
LTPLGIRGEGEAECSFLAVPARDAELVDQLLGGLKGRRFVALFPGASIAERRWGAERFASLAALLVQRGIGVVVVGGESE
RAAGRTVEAAGGLSLCGRTGLAATAAVIGRSALLVSGDSGILHIAVGLGIPTVSLFGPGRAKKWAPRNGYHTVINKELPC
SPCTTFGYTPKCPGNARCMADITVDEVKGAVLAVLEKIISHPK
>Mature_363_residues
MNPRLLKLIDSVVGRTAAAIIPPPSLVLQPHLPKSILVIRPGGIGDAALLAPALHALQRSYPGVSIDILAERRNAGAFAL
CPGLRSVSRYDVPAEFFPVLRSSYDVVIDTEQWHRLSAVVARIVRAGIKIGFATNERRRLFTHPIPYEQDDYEADSFMRL
LTPLGIRGEGEAECSFLAVPARDAELVDQLLGGLKGRRFVALFPGASIAERRWGAERFASLAALLVQRGIGVVVVGGESE
RAAGRTVEAAGGLSLCGRTGLAATAAVIGRSALLVSGDSGILHIAVGLGIPTVSLFGPGRAKKWAPRNGYHTVINKELPC
SPCTTFGYTPKCPGNARCMADITVDEVKGAVLAVLEKIISHPK

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=286, Percent_Identity=24.8251748251748, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38585; Mature: 38585

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRLLKLIDSVVGRTAAAIIPPPSLVLQPHLPKSILVIRPGGIGDAALLAPALHALQRS
CCCHHHHHHHHHHCCCEEEECCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
YPGVSIDILAERRNAGAFALCPGLRSVSRYDVPAEFFPVLRSSYDVVIDTEQWHRLSAVV
CCCCEEEEEEECCCCCEEEECCCCHHHHHCCCCHHHHHHHHCCCCEEEECHHHHHHHHHH
ARIVRAGIKIGFATNERRRLFTHPIPYEQDDYEADSFMRLLTPLGIRGEGEAECSFLAVP
HHHHHHCCEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
ARDAELVDQLLGGLKGRRFVALFPGASIAERRWGAERFASLAALLVQRGIGVVVVGGESE
CCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCC
RAAGRTVEAAGGLSLCGRTGLAATAAVIGRSALLVSGDSGILHIAVGLGIPTVSLFGPGR
CCCCCEEECCCCHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEECCCC
AKKWAPRNGYHTVINKELPCSPCTTFGYTPKCPGNARCMADITVDEVKGAVLAVLEKIIS
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
HPK
CCC
>Mature Secondary Structure
MNPRLLKLIDSVVGRTAAAIIPPPSLVLQPHLPKSILVIRPGGIGDAALLAPALHALQRS
CCCHHHHHHHHHHCCCEEEECCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
YPGVSIDILAERRNAGAFALCPGLRSVSRYDVPAEFFPVLRSSYDVVIDTEQWHRLSAVV
CCCCEEEEEEECCCCCEEEECCCCHHHHHCCCCHHHHHHHHCCCCEEEECHHHHHHHHHH
ARIVRAGIKIGFATNERRRLFTHPIPYEQDDYEADSFMRLLTPLGIRGEGEAECSFLAVP
HHHHHHCCEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC
ARDAELVDQLLGGLKGRRFVALFPGASIAERRWGAERFASLAALLVQRGIGVVVVGGESE
CCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCC
RAAGRTVEAAGGLSLCGRTGLAATAAVIGRSALLVSGDSGILHIAVGLGIPTVSLFGPGR
CCCCCEEECCCCHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEEECCCCEEEEECCCC
AKKWAPRNGYHTVINKELPCSPCTTFGYTPKCPGNARCMADITVDEVKGAVLAVLEKIIS
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
HPK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA