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The map label for this gene is rfbA [H]

Identifier: 39996604

GI number: 39996604

Start: 1649079

End: 1649930

Strand: Direct

Name: rfbA [H]

Synonym: GSU1504

Alternate gene names: 39996604

Gene position: 1649079-1649930 (Clockwise)

Preceding gene: 39996603

Following gene: 39996605

Centisome position: 43.24

GC content: 56.1

Gene sequence:

>852_bases
ATGCAGATGAACCCAGGGACAGGGAGTCAGGCACAAGAAGAGATCATTATCGAGGCGGGGCGGACTGAAGTCCGCTACTG
GAGCGATGTCTGGCGCTATCGTGAGCTGTTTTACTTCCTGGCTTGGCGCGACATTCTCGTCCGGTACAAGCAGACGGCCA
TCGGCATTGCATGGAGCGTACTGCGTCCTCTGGCGACCATGGTTGTCTTTACGCTTGTCTTTGGGACATTTGCCGGTCTT
CCCTCTCAGGGTGCACCCTACCCGGTCATGGTTTTCGCTGCCATGCTCCCCTGGCAATTCTTTGCCACAGCCCTCGCCGA
ATGCAGCAATTCGCTGGTAGTCAACAGCAACCTACTTTCAAAGGTCTACTTCCCCCGACTGATTGTTCCCTCAAGCGCAA
TCATTGTCTGCGTCGTGGATTTCGTCATCTCGCTTGTCCTGCTTTTCCTGCTCATGAGTTGGTATGGCGTGTGGCCTGAC
TGGCGTATGCTGACGCTGCCGCTGTTTTCCTTGCTGGCGCTGCTCTGTGCTCTAGGGAGCGGTTTGTGGCTGGCTGCCCT
CAATGTCAAATACCGCGATTTCCGCTACGTGGTGCCCTTTATCGTGCAGTTCGGCCTTTATATCTCGCCGGTGGGGTTCA
GCAGTTCAGTGGTGCCGGAGCGCTGGCGACTGATCTATTCGCTGAATCCCATGGTGGGCGTGATCGACGGGTTTCGCTGG
GCGATTCTTGGTGAAGGGCAGAAACTGAGCTGGGACGGGCTTGCATTGGCGGTCGCCGGCACTGCCGTACTTCTCGTGTT
TGGCATTCGATACTTCAGACAAACCGAACGTGCCTTCGCCGATATTATCTGA

Upstream 100 bases:

>100_bases
ATCACGCAAGTACCGGGAAATGGGTCGCTTTGGGCTCGGATTTCTGTGGGGTGTGCTGACGGCCCCCTTTCGCAGCGGTA
GCCTTAACTATCGATAGGTC

Downstream 100 bases:

>100_bases
GAAACTATGAGCAACGTCATTTCGGTCGAGAACCTCGGTAAAAAATACCTCATCAGCCACCAGGGCAGGGAACCCTACAC
GGCCCTACGCGACGTGCTTA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MQMNPGTGSQAQEEIIIEAGRTEVRYWSDVWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMVVFTLVFGTFAGL
PSQGAPYPVMVFAAMLPWQFFATALAECSNSLVVNSNLLSKVYFPRLIVPSSAIIVCVVDFVISLVLLFLLMSWYGVWPD
WRMLTLPLFSLLALLCALGSGLWLAALNVKYRDFRYVVPFIVQFGLYISPVGFSSSVVPERWRLIYSLNPMVGVIDGFRW
AILGEGQKLSWDGLALAVAGTAVLLVFGIRYFRQTERAFADII

Sequences:

>Translated_283_residues
MQMNPGTGSQAQEEIIIEAGRTEVRYWSDVWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMVVFTLVFGTFAGL
PSQGAPYPVMVFAAMLPWQFFATALAECSNSLVVNSNLLSKVYFPRLIVPSSAIIVCVVDFVISLVLLFLLMSWYGVWPD
WRMLTLPLFSLLALLCALGSGLWLAALNVKYRDFRYVVPFIVQFGLYISPVGFSSSVVPERWRLIYSLNPMVGVIDGFRW
AILGEGQKLSWDGLALAVAGTAVLLVFGIRYFRQTERAFADII
>Mature_283_residues
MQMNPGTGSQAQEEIIIEAGRTEVRYWSDVWRYRELFYFLAWRDILVRYKQTAIGIAWSVLRPLATMVVFTLVFGTFAGL
PSQGAPYPVMVFAAMLPWQFFATALAECSNSLVVNSNLLSKVYFPRLIVPSSAIIVCVVDFVISLVLLFLLMSWYGVWPD
WRMLTLPLFSLLALLCALGSGLWLAALNVKYRDFRYVVPFIVQFGLYISPVGFSSSVVPERWRLIYSLNPMVGVIDGFRW
AILGEGQKLSWDGLALAVAGTAVLLVFGIRYFRQTERAFADII

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31985; Mature: 31985

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMNPGTGSQAQEEIIIEAGRTEVRYWSDVWRYRELFYFLAWRDILVRYKQTAIGIAWSV
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPLATMVVFTLVFGTFAGLPSQGAPYPVMVFAAMLPWQFFATALAECSNSLVVNSNLLS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHH
KVYFPRLIVPSSAIIVCVVDFVISLVLLFLLMSWYGVWPDWRMLTLPLFSLLALLCALGS
HHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
GLWLAALNVKYRDFRYVVPFIVQFGLYISPVGFSSSVVPERWRLIYSLNPMVGVIDGFRW
CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEECCCHHHHHCCCEE
AILGEGQKLSWDGLALAVAGTAVLLVFGIRYFRQTERAFADII
EEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQMNPGTGSQAQEEIIIEAGRTEVRYWSDVWRYRELFYFLAWRDILVRYKQTAIGIAWSV
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPLATMVVFTLVFGTFAGLPSQGAPYPVMVFAAMLPWQFFATALAECSNSLVVNSNLLS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHH
KVYFPRLIVPSSAIIVCVVDFVISLVLLFLLMSWYGVWPDWRMLTLPLFSLLALLCALGS
HHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
GLWLAALNVKYRDFRYVVPFIVQFGLYISPVGFSSSVVPERWRLIYSLNPMVGVIDGFRW
CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHEECCCHHHHHCCCEE
AILGEGQKLSWDGLALAVAGTAVLLVFGIRYFRQTERAFADII
EEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]