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The map label for this gene is rfbB [H]

Identifier: 39996605

GI number: 39996605

Start: 1649937

End: 1651205

Strand: Direct

Name: rfbB [H]

Synonym: GSU1505

Alternate gene names: 39996605

Gene position: 1649937-1651205 (Clockwise)

Preceding gene: 39996604

Following gene: 39996606

Centisome position: 43.26

GC content: 53.11

Gene sequence:

>1269_bases
ATGAGCAACGTCATTTCGGTCGAGAACCTCGGTAAAAAATACCTCATCAGCCACCAGGGCAGGGAACCCTACACGGCCCT
ACGCGACGTGCTTACCGATGGGGCGCGTGCGTTCTACCGCCGGTTGTTTTCGCCCGGAACGAGCCAAGCGGACGCACAGG
CCGAGGAGTTTTGGGCGCTGAAGGATGTTTCGTTCGAGGTGAAGCAGGGTGATCGAATTGGTATCATCGGCCGCAACGGG
GCTGGGAAGTCGACGCTGCTCAAGATACTGAGCCGTATTACCGAGCCGACAGAGGGGCGCGTCAGGATCAGGGGACGGGT
AGCGAGCCTTCTGGAAGTTGGGACCGGCTTTCACCCTGAACTAACCGGACGGGAAAATATTTTTCTGAACGGGGCCATAC
TCGGTATGAACCGGGCGGAGATCGCCCGCAAGTTTGATGAGATTGTTGCTTTTGCGGAGATTGAGAAGTTTCTCGATACG
CCGGTGAAGAGATATTCTTCGGGGATGTACGTACGGCTGGCTTTCGCCGTGGCGGCGCATCTGGAACCAGAGATCCTAAT
TGTTGATGAGGTGCTGGCGGTAGGGGATGCACAGTTTCAAAATAAATGTCTTGGCAAGATGGAGGATGTATCGACAAAAG
AAGGTAGGACGGTGCTGTTTGTAAGTCATAATATGGGGGCTATCGACCGATTGTGTACTCGGGCGGTTCTGCTCGAAAGG
GGGCGGGTCCGTCTCGCCGACTTCACAAAGCCCGTGATTCAGATGTACTTGGACAAGGCGAAGAACGCGATATCTGCCTG
GAGCTGCTCAACATCAATTCCTGACTTTGATGGGATCTTTTTCGAATCAATTAGCATCGTCAACAAGGACAGAAAGATTG
CAGAGGTTTTGCCCTCTAATGAACCATTCTCGATTACCCTTGTGGTCAATGCCACCGCTTCGCTAAAGGGAGTGCAGATC
GCCATCAGAATAACCAACGAGCAAGGGATTCCAATTCTCACCACAACCAACTGTGATAAGGCAGGAAAGCTGCAGGAGAT
CAGCAGGGGGAGGTACCGGTACACAGTTTCTCTTCCGGCAAGTTTTCTGCCACCTGGGTATTACACGCTGATTGTTGCCT
CCTTTGTCCCCGGTGAAAAGCTGTTCGACGGCGTTGAAGACAAGCTTGGGTTTTGCATCGATGATATGGGCTCGCTTGCG
ACTCTGATGAAGGATGGTCGGCTAGGAGTTGTGACCCCCCTGATGCCTTGGGACGAGGTTCGTTTATGA

Upstream 100 bases:

>100_bases
GCTTGCATTGGCGGTCGCCGGCACTGCCGTACTTCTCGTGTTTGGCATTCGATACTTCAGACAAACCGAACGTGCCTTCG
CCGATATTATCTGAGAAACT

Downstream 100 bases:

>100_bases
CTGGCATCGTCACTGCAAATTGGTGGACCTCACTGATATACCGGGTGTTTGTCCGAACAGCCTGTTTACGTGCAGGGAGA
GGATTGCTTCCGAATATTTG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MSNVISVENLGKKYLISHQGREPYTALRDVLTDGARAFYRRLFSPGTSQADAQAEEFWALKDVSFEVKQGDRIGIIGRNG
AGKSTLLKILSRITEPTEGRVRIRGRVASLLEVGTGFHPELTGRENIFLNGAILGMNRAEIARKFDEIVAFAEIEKFLDT
PVKRYSSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAQFQNKCLGKMEDVSTKEGRTVLFVSHNMGAIDRLCTRAVLLER
GRVRLADFTKPVIQMYLDKAKNAISAWSCSTSIPDFDGIFFESISIVNKDRKIAEVLPSNEPFSITLVVNATASLKGVQI
AIRITNEQGIPILTTTNCDKAGKLQEISRGRYRYTVSLPASFLPPGYYTLIVASFVPGEKLFDGVEDKLGFCIDDMGSLA
TLMKDGRLGVVTPLMPWDEVRL

Sequences:

>Translated_422_residues
MSNVISVENLGKKYLISHQGREPYTALRDVLTDGARAFYRRLFSPGTSQADAQAEEFWALKDVSFEVKQGDRIGIIGRNG
AGKSTLLKILSRITEPTEGRVRIRGRVASLLEVGTGFHPELTGRENIFLNGAILGMNRAEIARKFDEIVAFAEIEKFLDT
PVKRYSSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAQFQNKCLGKMEDVSTKEGRTVLFVSHNMGAIDRLCTRAVLLER
GRVRLADFTKPVIQMYLDKAKNAISAWSCSTSIPDFDGIFFESISIVNKDRKIAEVLPSNEPFSITLVVNATASLKGVQI
AIRITNEQGIPILTTTNCDKAGKLQEISRGRYRYTVSLPASFLPPGYYTLIVASFVPGEKLFDGVEDKLGFCIDDMGSLA
TLMKDGRLGVVTPLMPWDEVRL
>Mature_421_residues
SNVISVENLGKKYLISHQGREPYTALRDVLTDGARAFYRRLFSPGTSQADAQAEEFWALKDVSFEVKQGDRIGIIGRNGA
GKSTLLKILSRITEPTEGRVRIRGRVASLLEVGTGFHPELTGRENIFLNGAILGMNRAEIARKFDEIVAFAEIEKFLDTP
VKRYSSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAQFQNKCLGKMEDVSTKEGRTVLFVSHNMGAIDRLCTRAVLLERG
RVRLADFTKPVIQMYLDKAKNAISAWSCSTSIPDFDGIFFESISIVNKDRKIAEVLPSNEPFSITLVVNATASLKGVQIA
IRITNEQGIPILTTTNCDKAGKLQEISRGRYRYTVSLPASFLPPGYYTLIVASFVPGEKLFDGVEDKLGFCIDDMGSLAT
LMKDGRLGVVTPLMPWDEVRL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=28.7958115183246, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI153792144, Length=199, Percent_Identity=27.6381909547739, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI6005701, Length=193, Percent_Identity=26.4248704663212, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI27477115, Length=193, Percent_Identity=27.4611398963731, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=28.5067873303167, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI27262624, Length=198, Percent_Identity=26.2626262626263, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI27262626, Length=198, Percent_Identity=26.2626262626263, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI47078218, Length=197, Percent_Identity=29.4416243654822, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI45446740, Length=197, Percent_Identity=29.4416243654822, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=27.9620853080569, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI150417984, Length=197, Percent_Identity=26.9035532994924, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI30795238, Length=198, Percent_Identity=25.2525252525253, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27881501, Length=198, Percent_Identity=25.2525252525253, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI4505771, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI73747915, Length=202, Percent_Identity=26.2376237623762, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI21536376, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1786398, Length=202, Percent_Identity=27.7227722772277, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081709, Length=194, Percent_Identity=24.7422680412371, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1789032, Length=202, Percent_Identity=26.7326732673267, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=23.7113402061856, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787029, Length=201, Percent_Identity=26.865671641791, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI48994943, Length=198, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=202, Percent_Identity=25.7425742574257, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786319, Length=300, Percent_Identity=24, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789891, Length=203, Percent_Identity=25.1231527093596, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788450, Length=198, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=24.6636771300448, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788210, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87082267, Length=336, Percent_Identity=22.3214285714286, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=23.4309623430962, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790525, Length=206, Percent_Identity=29.126213592233, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=23.4782608695652, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI48995001, Length=199, Percent_Identity=26.1306532663317, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=25.2293577981651, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=27.1844660194175, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=30.2197802197802, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788506, Length=205, Percent_Identity=24.8780487804878, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=25.8064516129032, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=212, Percent_Identity=29.2452830188679, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565586, Length=203, Percent_Identity=26.1083743842365, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=248, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221500365, Length=203, Percent_Identity=26.6009852216749, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007184, Length=203, Percent_Identity=26.6009852216749, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24666092, Length=196, Percent_Identity=27.0408163265306, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221512771, Length=195, Percent_Identity=26.1538461538462, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648314, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 46636; Mature: 46505

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVISVENLGKKYLISHQGREPYTALRDVLTDGARAFYRRLFSPGTSQADAQAEEFWAL
CCCEECHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEH
KDVSFEVKQGDRIGIIGRNGAGKSTLLKILSRITEPTEGRVRIRGRVASLLEVGTGFHPE
HCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCC
LTGRENIFLNGAILGMNRAEIARKFDEIVAFAEIEKFLDTPVKRYSSGMYVRLAFAVAAH
CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHH
LEPEILIVDEVLAVGDAQFQNKCLGKMEDVSTKEGRTVLFVSHNMGAIDRLCTRAVLLER
CCCCEEEEEHHHHHCCHHHHHHHHCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHC
GRVRLADFTKPVIQMYLDKAKNAISAWSCSTSIPDFDGIFFESISIVNKDRKIAEVLPSN
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCC
EPFSITLVVNATASLKGVQIAIRITNEQGIPILTTTNCDKAGKLQEISRGRYRYTVSLPA
CCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCEEEEEECCH
SFLPPGYYTLIVASFVPGEKLFDGVEDKLGFCIDDMGSLATLMKDGRLGVVTPLMPWDEV
HHCCCCHHHHHHHHCCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCHHC
RL
CC
>Mature Secondary Structure 
SNVISVENLGKKYLISHQGREPYTALRDVLTDGARAFYRRLFSPGTSQADAQAEEFWAL
CCEECHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEH
KDVSFEVKQGDRIGIIGRNGAGKSTLLKILSRITEPTEGRVRIRGRVASLLEVGTGFHPE
HCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCC
LTGRENIFLNGAILGMNRAEIARKFDEIVAFAEIEKFLDTPVKRYSSGMYVRLAFAVAAH
CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHH
LEPEILIVDEVLAVGDAQFQNKCLGKMEDVSTKEGRTVLFVSHNMGAIDRLCTRAVLLER
CCCCEEEEEHHHHHCCHHHHHHHHCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHC
GRVRLADFTKPVIQMYLDKAKNAISAWSCSTSIPDFDGIFFESISIVNKDRKIAEVLPSN
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCC
EPFSITLVVNATASLKGVQIAIRITNEQGIPILTTTNCDKAGKLQEISRGRYRYTVSLPA
CCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCHHHHCCCCEEEEEECCH
SFLPPGYYTLIVASFVPGEKLFDGVEDKLGFCIDDMGSLATLMKDGRLGVVTPLMPWDEV
HHCCCCHHHHHHHHCCCCHHHHHCHHHHHCCCHHHHHHHHHHHCCCCCEEEECCCCCHHC
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]