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The map label for this gene is ygcH [H]

Identifier: 39996491

GI number: 39996491

Start: 1518711

End: 1519319

Strand: Direct

Name: ygcH [H]

Synonym: GSU1389

Alternate gene names: 39996491

Gene position: 1518711-1519319 (Clockwise)

Preceding gene: 39996490

Following gene: 39996492

Centisome position: 39.82

GC content: 53.04

Gene sequence:

>609_bases
ATGTATCTGAGTAAAGTCTTGATCAACGGGACAGCCTGTCGCAATCCCTACGAGATTCATCGAGTGTTGTGGAAGCTCTT
TCCCGAAGATGCCGATGCCGAGCGTGATTTTCTCTTTCGTGTTGAGCGATCCGGTCAACAGAGCGTGGAGGTGTTGTTGC
AGTCCCGACGTGAACCTACTATGGCTGCATCTCGTGAAGTACTCTTGATGGGAAGCAAACCCTACCTTCTCAGCCTCCAG
CAGGATCAGCAGCTGCGCTTTATGCTAGTCGCCAACCCGATAAAGACGATCAACGACGAAAGCGCGAGACTAAATAGTGC
CAATGAAATAAAGAAGTGCCGCGTTCCGCTGATTCGTGAGGAGGATCTGCGTGCATGGCTGAAACGGAAACTTGAGGGCG
TGGCCGTCATTGAGGCGGTCGAGGTAGAAAAGCGGCCGGCTATGAACTTTCGTAAGGCCAGGGAAAAGCGGGTCGGTAAG
GTACAGGCGGTTAGTTTTCATGGTGTGTTGTCAGTGACGGACCCCGTCGGGTTGATATCCCTGATCAATACCGGCATCGG
CCCTGCCAAGGCCTTTGGCTGCGGTTTGCTATCGCTGGCTAGGACATAA

Upstream 100 bases:

>100_bases
GAGCCGGGCGAAACACGAACCATACGGCTTCGTGACGTGCCATTGGTGCGCCAGCCACGCCAGTTTGCCAGCCGCAACGT
CCATGTCTATGGAGGGGTCG

Downstream 100 bases:

>100_bases
ATTCTCCCCCCGCCCCCCTTTCATAAAGGGGGGAAAGGAGCCTTTTCGGCAGGTGTGATAATAGGCAACAGGACTATCGG
TACAAATTAACCTTAATATT

Product: CRISPR-associated Cse3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MYLSKVLINGTACRNPYEIHRVLWKLFPEDADAERDFLFRVERSGQQSVEVLLQSRREPTMAASREVLLMGSKPYLLSLQ
QDQQLRFMLVANPIKTINDESARLNSANEIKKCRVPLIREEDLRAWLKRKLEGVAVIEAVEVEKRPAMNFRKAREKRVGK
VQAVSFHGVLSVTDPVGLISLINTGIGPAKAFGCGLLSLART

Sequences:

>Translated_202_residues
MYLSKVLINGTACRNPYEIHRVLWKLFPEDADAERDFLFRVERSGQQSVEVLLQSRREPTMAASREVLLMGSKPYLLSLQ
QDQQLRFMLVANPIKTINDESARLNSANEIKKCRVPLIREEDLRAWLKRKLEGVAVIEAVEVEKRPAMNFRKAREKRVGK
VQAVSFHGVLSVTDPVGLISLINTGIGPAKAFGCGLLSLART
>Mature_202_residues
MYLSKVLINGTACRNPYEIHRVLWKLFPEDADAERDFLFRVERSGQQSVEVLLQSRREPTMAASREVLLMGSKPYLLSLQ
QDQQLRFMLVANPIKTINDESARLNSANEIKKCRVPLIREEDLRAWLKRKLEGVAVIEAVEVEKRPAMNFRKAREKRVGK
VQAVSFHGVLSVTDPVGLISLINTGIGPAKAFGCGLLSLART

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=202, Percent_Identity=47.5247524752475, Blast_Score=165, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010179 [H]

Pfam domain/function: PF08798 CRISPR_assoc [H]

EC number: NA

Molecular weight: Translated: 22787; Mature: 22787

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSKVLINGTACRNPYEIHRVLWKLFPEDADAERDFLFRVERSGQQSVEVLLQSRREPT
CCHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHEECCCCHHHHHHHHHHCCCCC
MAASREVLLMGSKPYLLSLQQDQQLRFMLVANPIKTINDESARLNSANEIKKCRVPLIRE
HHCCCEEEEECCCCEEEEECCCCCEEEEEEECCHHHCCCCHHHCCCHHHHHHCCCCCCCH
EDLRAWLKRKLEGVAVIEAVEVEKRPAMNFRKAREKRVGKVQAVSFHGVLSVTDPVGLIS
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCEEEECCHHHHHH
LINTGIGPAKAFGCGLLSLART
HHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYLSKVLINGTACRNPYEIHRVLWKLFPEDADAERDFLFRVERSGQQSVEVLLQSRREPT
CCHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHEECCCCHHHHHHHHHHCCCCC
MAASREVLLMGSKPYLLSLQQDQQLRFMLVANPIKTINDESARLNSANEIKKCRVPLIRE
HHCCCEEEEECCCCEEEEECCCCCEEEEEEECCHHHCCCCHHHCCCHHHHHHCCCCCCCH
EDLRAWLKRKLEGVAVIEAVEVEKRPAMNFRKAREKRVGKVQAVSFHGVLSVTDPVGLIS
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCEEEECCHHHHHH
LINTGIGPAKAFGCGLLSLART
HHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]