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The map label for this gene is ygcI [H]

Identifier: 39996490

GI number: 39996490

Start: 1518044

End: 1518724

Strand: Direct

Name: ygcI [H]

Synonym: GSU1388

Alternate gene names: 39996490

Gene position: 1518044-1518724 (Clockwise)

Preceding gene: 39996489

Following gene: 39996491

Centisome position: 39.8

GC content: 57.27

Gene sequence:

>681_bases
ATGCGTGATTATCTGATCCTCAAGCTGCAAGGACCCATGCAGTCATGGGGGGAGCATACTTTCGAGGGAAAGCGACCGTC
CGGCAATTTCCCCACACGTAGCGCCCTCCTCGGCCTGCTCGGGGCCTGCCTGGGCATCAGGCGAAACGAGGCCGGTCGCC
TGCAACAACTGGCAGACAGCGTTGCCTTTGCCGTTCGTAAGGAAGAACGCTTCCGAATTAGGCACGACGGCCGGAAAACT
TCCCTGCCGATCATCAAGGCAACCGATTACCACACGGTGAGGGATGCGCGGGAGGATTATTTCGGCCTGAAAAGCCATGA
GACCATTCAGACTTGGCGTGAATACCTGTTCGATGCTACCTACACCGTGGCCGTCTGGAATACCGACGTTGCGACGATAT
CGCTGGTTGAACTGGAACAGGCCGTAAAGTCGCCCCACTTCACCCCCTATCTTGGTCGGCGCAGTTGTCCATTGTCCCGT
CCGCTGTTCGAGATGAGCTTTTCTGCAGCGAATGCCTGTGACGCTTTGCGCATGATTCCTTCGGATGGTGGGGTGATCTA
CAGTGAGGAGCCGGGCGAAACACGAACCATACGGCTTCGTGACGTGCCATTGGTGCGCCAGCCACGCCAGTTTGCCAGCC
GCAACGTCCATGTCTATGGAGGGGTCGATGTATCTGAGTAA

Upstream 100 bases:

>100_bases
AGTTCATCCTCGGTCAGAGTAGCGTCCCTGAAGGGATCACCCGGAAGAGTACTATTGAAGAACTCAAAACCTGGGTGATG
AACAACGGAGAGGGGTAACC

Downstream 100 bases:

>100_bases
AGTCTTGATCAACGGGACAGCCTGTCGCAATCCCTACGAGATTCATCGAGTGTTGTGGAAGCTCTTTCCCGAAGATGCCG
ATGCCGAGCGTGATTTTCTC

Product: CRISPR-associated Cas5e family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MRDYLILKLQGPMQSWGEHTFEGKRPSGNFPTRSALLGLLGACLGIRRNEAGRLQQLADSVAFAVRKEERFRIRHDGRKT
SLPIIKATDYHTVRDAREDYFGLKSHETIQTWREYLFDATYTVAVWNTDVATISLVELEQAVKSPHFTPYLGRRSCPLSR
PLFEMSFSAANACDALRMIPSDGGVIYSEEPGETRTIRLRDVPLVRQPRQFASRNVHVYGGVDVSE

Sequences:

>Translated_226_residues
MRDYLILKLQGPMQSWGEHTFEGKRPSGNFPTRSALLGLLGACLGIRRNEAGRLQQLADSVAFAVRKEERFRIRHDGRKT
SLPIIKATDYHTVRDAREDYFGLKSHETIQTWREYLFDATYTVAVWNTDVATISLVELEQAVKSPHFTPYLGRRSCPLSR
PLFEMSFSAANACDALRMIPSDGGVIYSEEPGETRTIRLRDVPLVRQPRQFASRNVHVYGGVDVSE
>Mature_226_residues
MRDYLILKLQGPMQSWGEHTFEGKRPSGNFPTRSALLGLLGACLGIRRNEAGRLQQLADSVAFAVRKEERFRIRHDGRKT
SLPIIKATDYHTVRDAREDYFGLKSHETIQTWREYLFDATYTVAVWNTDVATISLVELEQAVKSPHFTPYLGRRSCPLSR
PLFEMSFSAANACDALRMIPSDGGVIYSEEPGETRTIRLRDVPLVRQPRQFASRNVHVYGGVDVSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=229, Percent_Identity=57.2052401746725, Blast_Score=217, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 25660; Mature: 25660

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDYLILKLQGPMQSWGEHTFEGKRPSGNFPTRSALLGLLGACLGIRRNEAGRLQQLADS
CCCEEEEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VAFAVRKEERFRIRHDGRKTSLPIIKATDYHTVRDAREDYFGLKSHETIQTWREYLFDAT
HHHHHHHHHHEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCE
YTVAVWNTDVATISLVELEQAVKSPHFTPYLGRRSCPLSRPLFEMSFSAANACDALRMIP
EEEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHEECC
SDGGVIYSEEPGETRTIRLRDVPLVRQPRQFASRNVHVYGGVDVSE
CCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHCCEEEEECCEECC
>Mature Secondary Structure
MRDYLILKLQGPMQSWGEHTFEGKRPSGNFPTRSALLGLLGACLGIRRNEAGRLQQLADS
CCCEEEEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VAFAVRKEERFRIRHDGRKTSLPIIKATDYHTVRDAREDYFGLKSHETIQTWREYLFDAT
HHHHHHHHHHEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCE
YTVAVWNTDVATISLVELEQAVKSPHFTPYLGRRSCPLSRPLFEMSFSAANACDALRMIP
EEEEEEECCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHEECC
SDGGVIYSEEPGETRTIRLRDVPLVRQPRQFASRNVHVYGGVDVSE
CCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHCCEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]