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The map label for this gene is ygcJ [H]

Identifier: 39996489

GI number: 39996489

Start: 1516947

End: 1518041

Strand: Direct

Name: ygcJ [H]

Synonym: GSU1387

Alternate gene names: 39996489

Gene position: 1516947-1518041 (Clockwise)

Preceding gene: 39996488

Following gene: 39996490

Centisome position: 39.77

GC content: 54.61

Gene sequence:

>1095_bases
ATGAAGAACTTCATCAACTTTCACATCCTGATTTCCCACAGTCCCTCCTGCCTTAACCGCGACGATATGAACATGCAGAA
ATCTGCTGTTTTCGGTGGTGAGCGGCGGGTGCGCGTTTCCAGTCAAAGCCTCAAACGGGCCATCCGAAAGAGTGATTACT
ATCGTCAGCACCTTGGCGAAGCGAGTGTGCGCACCAAGAAGTTGGACGAACTGATCGCGATCATAAATGATCGTCTGGCC
GGACGCTACGATACCGACCTCCTGAAGAAGACTGTTGGGCTGCTGGCCGGCAAGGAGTTAAGTGTCGAGGTTGCGACAGA
AGGTGATGCCGTGGCGCCGTGGGCAATCGAAGAGGTGGCATGGTTCTGTGAGCAGGTCAAGAGGATGGTGGCGCAAGGAC
AGGACGAAAAAGCTCTGGGCAAATTGTTGAAGAATGAAACGGCTGCCATGCGGCAGGCTCTGGCATCCGGTGTTGATATT
GCACTTTCCGGCCGCATGGCGACGTCAGGTCTCATGAGTGAACTCGGCAAGGTCGATGGTGCCTTGGCCGTTGCCCATGT
CTTGACCACCCACAGCGTTGATGCGGATATCGACTGGTTCACTGCCGTGGATGACTTGCAGGAACTGGGCTCCGGTCATC
TCGATACGCAGGAATTTTCCAGCGGGGTCTTTTATCGTTATGCCAGCCTCAACGTGAAGCAGTTGCAGGAAAACCTGGGC
AATGCCCCGCGCGAGAAGGCACTGGAGATCGGCGCTCATCTGCTTCACATGCTGGCAACGATTGTCCCTTCAGCCAAACA
GCAGAGCTTCGCAGCTCACAACCTGGCCGACCTTGCCCTGGTTTCCTTTTCCGATATCCCGGTATCGCTCGCAAATGCAT
TCGAAAAACCTGTCCGTAGCGTCAATGGCAGCGGCTTCAAAGAGCCTTCCATTGCTGAACTGCATAACTACTGGCAGCAG
ATCCATACAGGTTACGGCCTTTCCGAGCGGTGCGGCGAGTTCATCCTCGGTCAGAGTAGCGTCCCTGAAGGGATCACCCG
GAAGAGTACTATTGAAGAACTCAAAACCTGGGTGATGAACAACGGAGAGGGGTAA

Upstream 100 bases:

>100_bases
ACAACTCTGGTACTGGAATGACCGGAGCAAGCGCGACCTGCTCGAAGATTACTTCCTCAATCACTCGAACTGATTTCAAA
CATCTATAGGAGATAGTTAC

Downstream 100 bases:

>100_bases
CCATGCGTGATTATCTGATCCTCAAGCTGCAAGGACCCATGCAGTCATGGGGGGAGCATACTTTCGAGGGAAAGCGACCG
TCCGGCAATTTCCCCACACG

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKNFINFHILISHSPSCLNRDDMNMQKSAVFGGERRVRVSSQSLKRAIRKSDYYRQHLGEASVRTKKLDELIAIINDRLA
GRYDTDLLKKTVGLLAGKELSVEVATEGDAVAPWAIEEVAWFCEQVKRMVAQGQDEKALGKLLKNETAAMRQALASGVDI
ALSGRMATSGLMSELGKVDGALAVAHVLTTHSVDADIDWFTAVDDLQELGSGHLDTQEFSSGVFYRYASLNVKQLQENLG
NAPREKALEIGAHLLHMLATIVPSAKQQSFAAHNLADLALVSFSDIPVSLANAFEKPVRSVNGSGFKEPSIAELHNYWQQ
IHTGYGLSERCGEFILGQSSVPEGITRKSTIEELKTWVMNNGEG

Sequences:

>Translated_364_residues
MKNFINFHILISHSPSCLNRDDMNMQKSAVFGGERRVRVSSQSLKRAIRKSDYYRQHLGEASVRTKKLDELIAIINDRLA
GRYDTDLLKKTVGLLAGKELSVEVATEGDAVAPWAIEEVAWFCEQVKRMVAQGQDEKALGKLLKNETAAMRQALASGVDI
ALSGRMATSGLMSELGKVDGALAVAHVLTTHSVDADIDWFTAVDDLQELGSGHLDTQEFSSGVFYRYASLNVKQLQENLG
NAPREKALEIGAHLLHMLATIVPSAKQQSFAAHNLADLALVSFSDIPVSLANAFEKPVRSVNGSGFKEPSIAELHNYWQQ
IHTGYGLSERCGEFILGQSSVPEGITRKSTIEELKTWVMNNGEG
>Mature_364_residues
MKNFINFHILISHSPSCLNRDDMNMQKSAVFGGERRVRVSSQSLKRAIRKSDYYRQHLGEASVRTKKLDELIAIINDRLA
GRYDTDLLKKTVGLLAGKELSVEVATEGDAVAPWAIEEVAWFCEQVKRMVAQGQDEKALGKLLKNETAAMRQALASGVDI
ALSGRMATSGLMSELGKVDGALAVAHVLTTHSVDADIDWFTAVDDLQELGSGHLDTQEFSSGVFYRYASLNVKQLQENLG
NAPREKALEIGAHLLHMLATIVPSAKQQSFAAHNLADLALVSFSDIPVSLANAFEKPVRSVNGSGFKEPSIAELHNYWQQ
IHTGYGLSERCGEFILGQSSVPEGITRKSTIEELKTWVMNNGEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=365, Percent_Identity=58.3561643835616, Blast_Score=453, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 39913; Mature: 39913

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFINFHILISHSPSCLNRDDMNMQKSAVFGGERRVRVSSQSLKRAIRKSDYYRQHLGE
CCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCH
ASVRTKKLDELIAIINDRLAGRYDTDLLKKTVGLLAGKELSVEVATEGDAVAPWAIEEVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
WFCEQVKRMVAQGQDEKALGKLLKNETAAMRQALASGVDIALSGRMATSGLMSELGKVDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH
ALAVAHVLTTHSVDADIDWFTAVDDLQELGSGHLDTQEFSSGVFYRYASLNVKQLQENLG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCEEHHHCCCHHHHHHHHC
NAPREKALEIGAHLLHMLATIVPSAKQQSFAAHNLADLALVSFSDIPVSLANAFEKPVRS
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VNGSGFKEPSIAELHNYWQQIHTGYGLSERCGEFILGQSSVPEGITRKSTIEELKTWVMN
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
NGEG
CCCC
>Mature Secondary Structure
MKNFINFHILISHSPSCLNRDDMNMQKSAVFGGERRVRVSSQSLKRAIRKSDYYRQHLGE
CCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCH
ASVRTKKLDELIAIINDRLAGRYDTDLLKKTVGLLAGKELSVEVATEGDAVAPWAIEEVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
WFCEQVKRMVAQGQDEKALGKLLKNETAAMRQALASGVDIALSGRMATSGLMSELGKVDG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH
ALAVAHVLTTHSVDADIDWFTAVDDLQELGSGHLDTQEFSSGVFYRYASLNVKQLQENLG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCEEHHHCCCHHHHHHHHC
NAPREKALEIGAHLLHMLATIVPSAKQQSFAAHNLADLALVSFSDIPVSLANAFEKPVRS
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VNGSGFKEPSIAELHNYWQQIHTGYGLSERCGEFILGQSSVPEGITRKSTIEELKTWVMN
CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
NGEG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]