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The map label for this gene is ygcK [H]

Identifier: 39996488

GI number: 39996488

Start: 1516476

End: 1516919

Strand: Direct

Name: ygcK [H]

Synonym: GSU1386

Alternate gene names: 39996488

Gene position: 1516476-1516919 (Clockwise)

Preceding gene: 39996487

Following gene: 39996489

Centisome position: 39.76

GC content: 58.78

Gene sequence:

>444_bases
ATGGAACGAACGCATGATTTCATGGGCCTCTATCAGGCATGGGAGCGGCTGGCTCCGGGCCCGAGAGCCGAGTTGCGCCG
AGTCGAACGCCCGGACGATCTACTGGAAGTGCCGGCTTTTTATCGGCTCTTCAGCGGTCGGGGAACCACGGAGTGGGAAA
AGGGAGCCTACCAGAGACTGATCTTCTGCCTGCCGTGCATCAAACACAGCGGCGAGAATATCAGCCTGGGCAGAGCGTTG
GCCAAGGGGAGGGGCGTTGGCGAAAAACGTCTTTTTCAGGTTGTGCGCAGCAGCGAGCCCAACGACATGATCCAGTTACG
CCGGATTCTGCGTATGGCCGAACCGACCGTGAACTGGGATCTGGCGGCGCGACAACTCTGGTACTGGAATGACCGGAGCA
AGCGCGACCTGCTCGAAGATTACTTCCTCAATCACTCGAACTGA

Upstream 100 bases:

>100_bases
CGCAACGATCCGGAATTAATCCGTACCACAGCCGTGGCGCGTAAGACACTGTACAAGCATTTAAATGCACTCAAACCACA
ACGGGATGGAAGGAGGGACG

Downstream 100 bases:

>100_bases
TTTCAAACATCTATAGGAGATAGTTACATGAAGAACTTCATCAACTTTCACATCCTGATTTCCCACAGTCCCTCCTGCCT
TAACCGCGACGATATGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MERTHDFMGLYQAWERLAPGPRAELRRVERPDDLLEVPAFYRLFSGRGTTEWEKGAYQRLIFCLPCIKHSGENISLGRAL
AKGRGVGEKRLFQVVRSSEPNDMIQLRRILRMAEPTVNWDLAARQLWYWNDRSKRDLLEDYFLNHSN

Sequences:

>Translated_147_residues
MERTHDFMGLYQAWERLAPGPRAELRRVERPDDLLEVPAFYRLFSGRGTTEWEKGAYQRLIFCLPCIKHSGENISLGRAL
AKGRGVGEKRLFQVVRSSEPNDMIQLRRILRMAEPTVNWDLAARQLWYWNDRSKRDLLEDYFLNHSN
>Mature_147_residues
MERTHDFMGLYQAWERLAPGPRAELRRVERPDDLLEVPAFYRLFSGRGTTEWEKGAYQRLIFCLPCIKHSGENISLGRAL
AKGRGVGEKRLFQVVRSSEPNDMIQLRRILRMAEPTVNWDLAARQLWYWNDRSKRDLLEDYFLNHSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789117, Length=153, Percent_Identity=43.1372549019608, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013382 [H]

Pfam domain/function: PF09485 CRISPR_Cse2 [H]

EC number: NA

Molecular weight: Translated: 17367; Mature: 17367

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTHDFMGLYQAWERLAPGPRAELRRVERPDDLLEVPAFYRLFSGRGTTEWEKGAYQRL
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IFCLPCIKHSGENISLGRALAKGRGVGEKRLFQVVRSSEPNDMIQLRRILRMAEPTVNWD
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
LAARQLWYWNDRSKRDLLEDYFLNHSN
HHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MERTHDFMGLYQAWERLAPGPRAELRRVERPDDLLEVPAFYRLFSGRGTTEWEKGAYQRL
CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IFCLPCIKHSGENISLGRALAKGRGVGEKRLFQVVRSSEPNDMIQLRRILRMAEPTVNWD
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
LAARQLWYWNDRSKRDLLEDYFLNHSN
HHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]