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The map label for this gene is ylbH [H]

Identifier: 39996346

GI number: 39996346

Start: 1345954

End: 1346517

Strand: Reverse

Name: ylbH [H]

Synonym: GSU1244

Alternate gene names: 39996346

Gene position: 1346517-1345954 (Counterclockwise)

Preceding gene: 39996347

Following gene: 39996345

Centisome position: 35.3

GC content: 64.36

Gene sequence:

>564_bases
GTGCGGGTCGTAGGCGGAAGCGCCCGGGGCCGTCGCCTGGCCGCACCCCGCGGCAACCGGGTACGCCCCACGGCCGACCG
GATCAAGGAGGCTCTCTTCAACATTCTTCATTCAGGAATGGAGGGCTTCGAAGAGGTACGCGTTCTGGACCTGTTCGCCG
GGACCGGGAACCTGGGAATTGAAGCATTGAGCCGCGGTTGCAGCGAAGCGGTGTTCGTGGACAGTCACCGGGAATCGGTG
GCCGTGATCCGGCGCAACCTTGATGAACTCGGCTTCGGCGACCGGGCCCGCATCATCGCCAGGGATGCCCTGACCGCCAT
TGATTACCTTGAGCGGGAGGGAGCCTCCTTCCGGCTCGTGATGCTCGACCCGCCCTACCGGCTCGGCTTGGCTGACAAGG
TCCTGGGGCGCCTGGCAGGGTCGCCCCTGATCGCAGAAGAGACGATCATCGTCGTCGAGTCCGCCGTGGACGAGGTACTA
CCCGACCTCATGGAACCGCTCCACTTGGTTGACCGGCGGATCTACGGCGATACCGCCCTCTCATTCTTCCGGAAAAGGAA
CTGA

Upstream 100 bases:

>100_bases
TCATCCACGACATGGCCTACCGGGAGGCCAAGGAATTCCTGCTGGCCTTCCACGCCAGGGGTAGCGCCTCGCGCATCGCC
CCCCTCATCGGACAGGACCA

Downstream 100 bases:

>100_bases
ACGCCCATGCCGACCAAGATTGCCGTCTACCCCGGCTCATTCGACCCGATCACCTACGGTCACCTGGACATCATCGACCG
CGCACTCAGGATATTCGACC

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSGMEGFEEVRVLDLFAGTGNLGIEALSRGCSEAVFVDSHRESV
AVIRRNLDELGFGDRARIIARDALTAIDYLEREGASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVL
PDLMEPLHLVDRRIYGDTALSFFRKRN

Sequences:

>Translated_187_residues
MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSGMEGFEEVRVLDLFAGTGNLGIEALSRGCSEAVFVDSHRESV
AVIRRNLDELGFGDRARIIARDALTAIDYLEREGASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVL
PDLMEPLHLVDRRIYGDTALSFFRKRN
>Mature_187_residues
MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSGMEGFEEVRVLDLFAGTGNLGIEALSRGCSEAVFVDSHRESV
AVIRRNLDELGFGDRARIIARDALTAIDYLEREGASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVL
PDLMEPLHLVDRRIYGDTALSFFRKRN

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=185, Percent_Identity=33.5135135135135, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20671; Mature: 20671

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSGMEGFEEVRVLDLFAGTGNLGI
CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EALSRGCSEAVFVDSHRESVAVIRRNLDELGFGDRARIIARDALTAIDYLEREGASFRLV
HHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
MLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLVDRRIYGDTAL
EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFRKRN
HHHHHCC
>Mature Secondary Structure
MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSGMEGFEEVRVLDLFAGTGNLGI
CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
EALSRGCSEAVFVDSHRESVAVIRRNLDELGFGDRARIIARDALTAIDYLEREGASFRLV
HHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
MLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLVDRRIYGDTAL
EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFRKRN
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]