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The map label for this gene is yhaM [H]

Identifier: 39996224

GI number: 39996224

Start: 1206510

End: 1207637

Strand: Direct

Name: yhaM [H]

Synonym: GSU1122

Alternate gene names: 39996224

Gene position: 1206510-1207637 (Clockwise)

Preceding gene: 39996223

Following gene: 39996225

Centisome position: 31.63

GC content: 59.22

Gene sequence:

>1128_bases
TTGAGCAAGATTTTCATAGCGAGCATCCATGACCGCGATCTGGTCGATTCCGTGTTTCTCGTGAAGGAAAAGATCATGGC
CATGGCCAAGAACGGCAAGCCCTACATGACGCTTCGGCTCATGGACAAAAGCGGCGAGATAGAGGGGCGTGTCTGGGACA
ACGTTGACCAGCTGTCGGCCTCCTTCGATAAGGACGACTTCGTTGGCGTCCGCTCCAAGGCATCGGTCTACCTGGGCAAA
ATGCAGCTTATCATTTCCGAGCTGGTGCGGGTTCCCGAAGACAGGGTCAACCTGGCGGACTTTCTCCCCGAATCGGACCG
CTCCATTGCCGAGATGGAGAGCGAGCTCAAGGCCCTGGTGGAAACCTTTTCCGATCAGCACCTGAAAGCGCTGATGAAGG
CCTTTTTCGACGATTCTTCCTTCATGGAGCTCTACCGGACCGCGCCGGCCGCCAAGGGGATGCACCACGTCTATCTGGGT
GGACTGCTGGAGCACTCACTGGCCGTGTCCCGCCTGGTTGACGCCATCGTCCCCCTCTACGCGGATCTCAACCGCGATCT
GCTGGTGGCGGGTGCCCTGTTGCACGACGTGGGCAAGGTGCGGGAGATGACGTACCTGCGTTCCTTCGACTACACCGACG
AGGGGAAACTCATCGGCCATATCACCATCGGCGTGGAGATGCTCCAGGAGCGGATTTCGACCATTCCCGGCTTCCCGCCG
GAGCTGGGGATGCTGCTCAAGCACATGCTGCTGTCCCACCATGGTCAGTACGAATACGGTTCCCCCAAGCGCCCCAAGAC
TGTCGAGGCAACGATTCTCAACTACCTGGACGATCTGGACTCCAAGATCAACGGGATCAGGACCCATATCCGCAAGGAAA
GCGAAAACCTGGGGCGCTGGACCTCCTATCACCGGCTCTATGACCGCTACTTCTACAAGGAGAGCTACAGCGGCGAGGAG
GAATACCGGGAAGGGGCGGATGAGCTCATGGTGCTCGAGCCGGAGCCGGTATCGCTGCCGGCTGCCCCTCGGGCCGCGGA
GGCCGAGCGCAAAAGCGGCAACACCGCCCGAAAGGGGTTCAGCAACAATCCGTTCGAGACCCTGCAAAAGAATCTGGATC
TGTTCTGA

Upstream 100 bases:

>100_bases
GTGCCGGCTACGCCGGGGGAATCATGAGCGCCGCACTGGACGGTATTCGCGTGGCCGACGCCATCGCGCGGAGCATATCC
GCAGACACAAGGAGAACACT

Downstream 100 bases:

>100_bases
GCATATATTCCACGTAGAGAGGGTGTATCATGATCTTCGAAACCGTTGTCGTCGGCCCGCTGGGGGTTAATTGTTTCATT
CTCGGCTGTGAGCAGAGCCG

Product: HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSKIFIASIHDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSASFDKDDFVGVRSKASVYLGK
MQLIISELVRVPEDRVNLADFLPESDRSIAEMESELKALVETFSDQHLKALMKAFFDDSSFMELYRTAPAAKGMHHVYLG
GLLEHSLAVSRLVDAIVPLYADLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPP
ELGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRWTSYHRLYDRYFYKESYSGEE
EYREGADELMVLEPEPVSLPAAPRAAEAERKSGNTARKGFSNNPFETLQKNLDLF

Sequences:

>Translated_375_residues
MSKIFIASIHDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSASFDKDDFVGVRSKASVYLGK
MQLIISELVRVPEDRVNLADFLPESDRSIAEMESELKALVETFSDQHLKALMKAFFDDSSFMELYRTAPAAKGMHHVYLG
GLLEHSLAVSRLVDAIVPLYADLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPP
ELGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRWTSYHRLYDRYFYKESYSGEE
EYREGADELMVLEPEPVSLPAAPRAAEAERKSGNTARKGFSNNPFETLQKNLDLF
>Mature_374_residues
SKIFIASIHDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSASFDKDDFVGVRSKASVYLGKM
QLIISELVRVPEDRVNLADFLPESDRSIAEMESELKALVETFSDQHLKALMKAFFDDSSFMELYRTAPAAKGMHHVYLGG
LLEHSLAVSRLVDAIVPLYADLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPPE
LGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRWTSYHRLYDRYFYKESYSGEEE
YREGADELMVLEPEPVSLPAAPRAAEAERKSGNTARKGFSNNPFETLQKNLDLF

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 42620; Mature: 42489

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIFIASIHDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
SFDKDDFVGVRSKASVYLGKMQLIISELVRVPEDRVNLADFLPESDRSIAEMESELKALV
CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCHHHHHHHHHHHHH
ETFSDQHLKALMKAFFDDSSFMELYRTAPAAKGMHHVYLGGLLEHSLAVSRLVDAIVPLY
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCH
ELGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRW
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYHRLYDRYFYKESYSGEEEYREGADELMVLEPEPVSLPAAPRAAEAERKSGNTARKGF
HHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCHHHCCC
SNNPFETLQKNLDLF
CCCCHHHHHHHCCCC
>Mature Secondary Structure 
SKIFIASIHDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSA
CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
SFDKDDFVGVRSKASVYLGKMQLIISELVRVPEDRVNLADFLPESDRSIAEMESELKALV
CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCHHHHHHHHHHHHH
ETFSDQHLKALMKAFFDDSSFMELYRTAPAAKGMHHVYLGGLLEHSLAVSRLVDAIVPLY
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCH
ELGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRW
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYHRLYDRYFYKESYSGEEEYREGADELMVLEPEPVSLPAAPRAAEAERKSGNTARKGF
HHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCHHHCCC
SNNPFETLQKNLDLF
CCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA